Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0953 ATGGGTTGTCAGATAAGGCTTCTGGGTCTGTGTCTATGGATGTACTTGGCAAACTTAAGCTTCATTGGAGTGGGTGCTGTGAATGGAAGAGGAGGTGCTGCTGTGAAAGGGATTGTTTTAGTTCATGGGAAATATGCTATTGGAAGGATTGATAATGATTTTGTCTGTGCAACTCTGGATTGGTGGCCTCCTCAGAAATGCGACTATGGAAAATGCAGTTGGGGTCATGCTTCTCTGCTCAATCTGGACCTcaacaacaaaattttgttaaatgcaGTGAAAGCCTTTTCACCCTTAAAAATTAGATTAGGTGGCACTTTGCAAGACAAGGTCATATATGGAACTGAAGATAATCGGCAGCGCTGTGCTCCTTTTGTTTGGAATGATAAAGAAATGTTTGGTTTCACTCAAGGGTGCTTACCCATGTATAGGTGGGATGAGCTAAACAGCTTTTTCCAAAAAGCAGGGGCTAAGGTCATCTTTGGATTAAATGCTCTTGCTGGAAAATCAATAAAGTCTGGTTTTGCTGTTGGACCTTGGAACTGTACCAATGCTGAATCTTTAATACGATACACCGTAAGAAAGAAGTACACCATTCATGGTTGGGAACTAGGCAATGAATTGTGTGGAAATGGAATTGGAGCAAGTGTTACTGCTGATCAATATGCTTCTGATGTAGCTGCTTTAAGAAACATAGTTCAAAATGCATATAGAGGGATTGAGCCAAAGCCACTAGTCATTGCACCTGGAGGCTTCTTTGACTCAGATTGGTTCAAGGAATTTATTAGCAAATCCGGTAAAACTGCTGATGTGGTCACCCACCACATTTATAACCTTGGGCCAGGAGTTGATGACCACCTAACTGAAAAAATTCTTGATCCTTCCTATCTGGATGGAGAGGCTAACACATTCAGTTCCCTCAAAAGTATACTTCAAAGTTCAGCAACCTCAGTAAAATCATGGGTTGGTGAGGCGGGAGGGGCTTACAATAGTGGCCATCATCTTGTGTCTGATGCATTTGTCTACAGCTTCTGGTATTTGGACCAGCTTGGCATGTCAGCTGTTTATAACACCAAAACGTATTGCAGACAGAGTTTGATAGGAGGAAACTATGGTTTACTCAATACTATCACTTTCATGCCAAATCCAGACTATTATAGTGCACTTCTATGGCACCGACTCATGGGAGGACGTGTCCTGTCAACTACCTTCTATGGGACAAAGAAGATAAGAACTTATGCACACTGTGCAAAGGGATCCAAAGGAATCACAATACTATTGCTCAACCTGGACAACAGCACCACTGTTCAAGTCAAAGTGgccttaaaatttaataagctacCTTACCGTAGAGTGGGTGAACCAGCCAGAAGAGAGTACCACTTAACAGCACCGGACAGGAATTTACATAGCCAAGTCATGTTGctaaatggaaaaattttaacTGTAAACTCAGCTGGTGAAATTCCTCCTTTGGAGCCTGTATATGTAGACTCATCAAAGCCAATAATTGTTGGTCCTCTATCTATTGTATTTGCTCATATACCAAATGTTCTTCTTTCGGCCTGCACCTAG 1575 0.407 MGCQIRLLGLCLWMYLANLSFIGVGAVNGRGGAAVKGIVLVHGKYAIGRIDNDFVCATLDWWPPQKCDYGKCSWGHASLLNLDLNNKILLNAVKAFSPLKIRLGGTLQDKVIYGTEDNRQRCAPFVWNDKEMFGFTQGCLPMYRWDELNSFFQKAGAKVIFGLNALAGKSIKSGFAVGPWNCTNAESLIRYTVRKKYTIHGWELGNELCGNGIGASVTADQYASDVAALRNIVQNAYRGIEPKPLVIAPGGFFDSDWFKEFISKSGKTADVVTHHIYNLGPGVDDHLTEKILDPSYLDGEANTFSSLKSILQSSATSVKSWVGEAGGAYNSGHHLVSDAFVYSFWYLDQLGMSAVYNTKTYCRQSLIGGNYGLLNTITFMPNPDYYSALLWHRLMGGRVLSTTFYGTKKIRTYAHCAKGSKGITILLLNLDNSTTVQVKVALKFNKLPYRRVGEPARREYHLTAPDRNLHSQVMLLNGKILTVNSAGEIPPLEPVYVDSSKPIIVGPLSIVFAHIPNVLLSACT 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0953 524 SUPERFAMILY (Trans)glycosidases 50 395 IPR017853 -
Ssu6g0953 524 PANTHER HEPARANASE-LIKE PROTEIN 3 3 523 - -
Ssu6g0953 524 Pfam Glycosyl hydrolase family 79, N-terminal domain 38 351 IPR005199 GO:0016020|GO:0016798
Ssu6g0953 524 PANTHER HEPARANASE-RELATED 3 523 - -
Ssu6g0953 524 Gene3D Glycosidases 72 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0953 Ssu-Chr6 15350283 15353338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0953 31 524 Glycoside Hydrolase AT5G61250 47.592 7.63e-172 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0953 K07964 - gmx:100778008 983.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0953 6 15350283 15353338 Ssu6g0953 6 15350283 15353338 ECH
Ssu6g0953 6 15350283 15353338 Ssu1g1760 1 43729012 43743009 PCT