Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1760 ATGGGTTCTCGGATTCAGCTGGTGGGTCTTTGCTTATGGCTGCACTTGACATGCTTCAGCTTCATTTTTGGTTTCACACTGAGTGAAGGAGTAGATGCAGCTGTGAAAGGGACTGTTGTCATTGATGACAAATCTGTGATTGGAACTATTGATGATGATTTTGTGTGTGCAACTTTGGATTGGTGGCCTCCTGAGAAATGTGACTATGGGAGATGCAGTTGGGGTCTTGCTTCTCTTCTCAATCTGGACCTCAAcaacaagatttttttaaacGCAGTGAAAGCCTTTTCACCTTTGAAACTTAGATTAGGTGGCAGTTTGCAAGATAAGGTAATATATGGCACTGAAGATAAATCCCAACCCTGTACTCCTTTTGTTAAGAACGATTCTGAGATGTTTGGTTTCACGCAAGGGTGCCTCCCAATGCAAAGATGGGATGAACTTAACTACTTTTTTGAACAAGCTGGGGCTAAGATTATCTTTGGATTAAATGCTCTTGCTGGAAAATCAATAAACGGTGGTTCTGCATTAGGACCTTGGAACTACACCAATGCTGAGTCCTTTATTCAATACACTGTTGGAAACGGATACACCATTCATGGATGGGAACTTGGCAATGAATTGAGTGGGAGTGGAGTTGGAACAAGCATTACAGCAGACCAATATGCTCCTGATGTTGCTGCTTTACGAGACATAGTTTACAATGCATATAGAGAGATTGAGCCTAAGCCACTAGTCATTGCACCCGGAGGTTTCTTTGATGCAACCTGGTTCAAGGAATTTATAACCAAATCTGGAAAATCTTTGGATGTGGTCACCCACCACATTTATAACCTTGGACCAGGAGTTGATGATCACCTTGTGGAAAAAATTCTGGATCCTTCCTATCTTGATGGAGAGGCTAGCATATTCAATGGCCTCAAAAATATGCTTGCAAGTACAGGTACCTCAGCAACAGCATGGGTTGGTGAATCGGGAGGGGCTTACAATAGTGGCCATCATCTTGTATCCGATGCATTTGTTTACAGTTTCTGGTATTTGGATCAGCTTGGCATGTCAGCTGCTTACAACACCAAAACATATTGCAGACAGAGTTTGATAGGAGGAAACTATGGTTTGCTCAATACTACCAATTTCCAGCCAAACCCAGACTACTATAGTGCTCTTCTTTGGCACCGACTCATGGGAAGATCTGTACTCTCAACTACCTTCTCTGGGACAAACAAGATACGAGCTTATGCACACTGTGCAAAGCAATCCAAGGGAATCACAGTACTATTGATCAACCTGGACAGCAACACAACTGTTGAAGCTGAAGTGACCTTCAACAACGCCAAGAGTTTTGTGAGGCACAGAAAGATGTCTGTTCATTCAAAAATGATGGAACTACCTCTCCATGGTGCAAGTGAAACATCAAGAGAAGAGTACCATCTGACTCCACAGGGTGGGGATATACATAGCCAAATCATGGTGCTAAATGGAAACGCTCTAAGTGTAAACTCAGATGGTGATATTCCTCCTCTGGAGCCTCTATATGTGAACTCATCAGAGCCAATAAGAGTTGCTCCTTTCTCTATTGTATTTGCCCATTTACCTGAGGCTGTTGTTACAGCTTGCGGCTAG 1623 0.4258 MGSRIQLVGLCLWLHLTCFSFIFGFTLSEGVDAAVKGTVVIDDKSVIGTIDDDFVCATLDWWPPEKCDYGRCSWGLASLLNLDLNNKIFLNAVKAFSPLKLRLGGSLQDKVIYGTEDKSQPCTPFVKNDSEMFGFTQGCLPMQRWDELNYFFEQAGAKIIFGLNALAGKSINGGSALGPWNYTNAESFIQYTVGNGYTIHGWELGNELSGSGVGTSITADQYAPDVAALRDIVYNAYREIEPKPLVIAPGGFFDATWFKEFITKSGKSLDVVTHHIYNLGPGVDDHLVEKILDPSYLDGEASIFNGLKNMLASTGTSATAWVGESGGAYNSGHHLVSDAFVYSFWYLDQLGMSAAYNTKTYCRQSLIGGNYGLLNTTNFQPNPDYYSALLWHRLMGRSVLSTTFSGTNKIRAYAHCAKQSKGITVLLINLDSNTTVEAEVTFNNAKSFVRHRKMSVHSKMMELPLHGASETSREEYHLTPQGGDIHSQIMVLNGNALSVNSDGDIPPLEPLYVNSSEPIRVAPFSIVFAHLPEAVVTACG 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1760 540 Pfam Glycosyl hydrolase family 79, N-terminal domain 37 351 IPR005199 GO:0016020|GO:0016798
Ssu1g1760 540 PANTHER HEPARANASE-RELATED 4 539 - -
Ssu1g1760 540 SUPERFAMILY (Trans)glycosidases 50 395 IPR017853 -
Ssu1g1760 540 Gene3D Glycosidases 73 393 - -
Ssu1g1760 540 PANTHER HEPARANASE-LIKE PROTEIN 3 4 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1760 Ssu-Chr1 43729012 43743009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1760 8 539 Glycoside Hydrolase AT5G61250 47.601 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1760 K07964 - gmx:100802477 979.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0953 6 15350283 15353338 Ssu1g1760 1 43729012 43743009 PCT