Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0941 ATGCCCACCTCAAACCTTAGCATATCCTACCATTTTGGCACAACCCCATCATCATCCATGGACTGGTTCTCCTGGCTATCCAGAACCACTCTTGAACCTTCCTTAATCTACGACTATGGCCTCACCTTTGCCCGCAATGAGCTTCAATTGGAAGATGCTTGCTACTTCAACCACGAGTTCCTTCAGAGCATGGGCGTCTCAATTGCCAAGCACAGGCTAGAGATTCTCAAGCTGGTCAAGAAGGAAGAAGGAGCAGCACGTCCCAAGAAGCTCTCTGGGGTCATCAAGAAGTGCCTAAGAAAGTGCATGAACAAGTTGGTTTTTCGTGAAGATGATCGTATGAAGGATATTCCCTCCATGCCTGTGTCggtgccaccaccagagacTAACTGGTATCAAGCGAAATGGAAAGGGTCACTTGTGAGGAAGCAACAAGGGAGTGAGGATCTTAAGGAAGAGAAGCCTCTACCTGTGCTCCCTATGTACAGAAGCAGGACCATAGCACTTTCAGGACCTTTAGATGGTAGTAGAATTCATGAGAAAATGGTCAACAACAAGGCCTTGAAGTTATCTGGGCCACTTGATGGAAGGATGCATGAGAGAATGATGAACACAAATAGGAGCCCTTTAATGTCTAGGCCTTTGGATGGAAGATATGTAGTCACAACAAAGAGTCCAAGAGTGGATGTAAGAGTGATGGTTGAGAATAAAAGCCCAAGACTACCAAGGCCTTTGGATGCAACCAGGGCCGAAAATGAAAGTCCATTGGGTTATAGTCCATTGAACAAGGCGAATGCTGATTTTGATTATGATGACGATCACACACTCTGGCCTACACTGTTCCAAGATCTGAAACCAACTTGA 864 0.4468 MPTSNLSISYHFGTTPSSSMDWFSWLSRTTLEPSLIYDYGLTFARNELQLEDACYFNHEFLQSMGVSIAKHRLEILKLVKKEEGAARPKKLSGVIKKCLRKCMNKLVFREDDRMKDIPSMPVSVPPPETNWYQAKWKGSLVRKQQGSEDLKEEKPLPVLPMYRSRTIALSGPLDGSRIHEKMVNNKALKLSGPLDGRMHERMMNTNRSPLMSRPLDGRYVVTTKSPRVDVRVMVENKSPRLPRPLDATRAENESPLGYSPLNKANADFDYDDDHTLWPTLFQDLKPT 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0941 287 CDD SAM_superfamily 21 81 - -
Ssu6g0941 287 PANTHER OSJNBA0033G05.11 PROTEIN 20 287 - -
Ssu6g0941 287 PANTHER STERILE ALPHA MOTIF (SAM) DOMAIN PROTEIN 20 287 - -
Ssu6g0941 287 SUPERFAMILY SAM/Pointed domain 24 81 IPR013761 -
Ssu6g0941 287 Gene3D - 18 87 IPR013761 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0941 Ssu-Chr6 15212473 15213336 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0941 - - gmx:100775936 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0941 6 15212473 15213336 Ssu6g0941 6 15212473 15213336 ECH
Ssu6g0941 6 15212473 15213336 Ssu1g1765 1 43861458 43862294 PCT