Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0714 ATGGCAACTGAGAGTCCAATTAGGATCTCGGAAGCTGGGGGTAAATGGCCGTCTCTTAAGGAAGCTGCAACTTTTGGTTCACCATCCCGTCACATGGCAACAGAGGATCTGGGTATATTTTTGAATGGCCATAGGTTTCATGGCAGTGGAAAGGATGTGGTACCCAATCGCAGTGGCAGTGCACCTCCAAGCATGGAAGGCTCATTTCTTGCCATTGAAAACTTGTTATCCCAGAACACCACCCGGAATGCCAGCTTGGGATCTCTGAACAGAGCTATGCAAAAATATGATAGTGGTAAAGGGTCTTCTCATTTGTCACGAGGAACTCTTGCAACACACAAGGAGGAGTCCGAGGATGATTCGACCCAACAGCTGTATGATAATGAGTTAGATAAGGCTAGTGGAAAATGGAATAGACAGGATGTGGCTTCAACATCATCTCAACACAACAATGGAGATCTTCCCCATGCCATGTCACCTGTATATAATAAGTCTCTTGGAGTGGTGGATGAACTAATTGATGTAGATTCCGGTTCCAGTTCTTCTCATGACCCTCCTGTCACTACAGTGGATGCTGTAAAACCTTCCATAGGTGCAGATGATATAAGGCTGTCATCAACTGTTAATTCCCTTGCCACTGTCACAAGCTCTTCATCTCTCAATTCCACTGGAAGCATGGGCTTTAAAGACTTAGATGTTACAATTGTAGAATCTCAATTAAGGGCTCTCAGTGTATCTAATCTACCAAATTCAGAAAGCCAGAGTTATGAAGATAAATGGAAGAACAGCTGCCAGAATAATTTGATGCAACACCAGCAACAAAACTATCCATGTGAAGTGCCTAGTACCAATTCTCAAAGTGAAAAATGTGCATACATTGGTATGGAACAGTTTCTTCACACTCCCAGCAAGTTCTCCTCTGATGTCCAGCCTGTACTGCAATCATCAGGGTTTACACCTCCACTATATGCTACAGCAGCAGCAGCTTATATGACCTCAACAAATCCATTTTACACCAATCTGCAGGCTTCGGGCATGTATTCTCCGCAATATGTAGGTGCATACCCTTTTAATCCCACAGCTGTTCCTCCATATATTGCTGCATACCCTCCTCACGGTTCTGTACCACTTGTTGATGGGGCTACTGGTTCTAGTTTTGCTCCCCAAGCACCAGGGGTTTCTTCTACTGCAGGAAACATTTCACACGGAGCTGAAATGATACATGcaaacaagttttttggacaattTGGATTTCCTCTGCAGCCTTCTTTTGGTGATCCTATTTACATGCAATATCATCAGCAACCTTTTGTGGAGGGATATGGTGTATCTGGTCATCTGCTGGCACCTAGAACCAGTGTTGGTGGCCAAATTGGCCCTTTTGATTCCCAAAAAAGGCCCACTAGTGGTGCTTACTTGGATgacaaaaaattacacaatcagAGAAGTGGTGCTAATTTGAATTCTAATAGAGGTGGGCTGATACTTCCTGGTTATTTTGGACACCCTTCAAATATGGGTTTTGTAACCCAATATCCAAGTTCCCCACTTTCTAGACCAGTTTTATCAGGATACCCAGAAGGCAGTCCTGGCCTTCTAGGTGGAAGGAATGAAATGAAACTCTCTCCAGCTTCTGGTAGAAATGGAGGTTTATTATCTGGATGGCAAGGTCAAAGAGCTTTTGACAGTGATCATGACCCCAAAATTGCTATTTTTCTTGAAGAGTTAAAATCTGGCAAAGGTCGCAGATTTGAGCTATCTGATATTATTGGACATATAGTTGAATTTAGCACTGATCAGCACGGGAGCCGTTTTATACAGCAGAAGTTGGAAAGCTGTGGTGTTGAAGAGAAGGAGTTAGTGTTCAAAGAGGTTCTTCCACATACTTCTAAATTAATGACTGATGTATTTGGCAACTATGTAATCCAAAAGTTTTTTGAGTATGGAAGCCCTGAGCAGAGGAAGGAACTTGCAAATAGACTTCTTGGTCAGATACTGCCTTTAAGTCTGCAGATGTATGGCTGTCGTGTAATCCAAAAGGCACTTGAGGTTATTGATATTGAACAGAAAGCTCAGCTTGTTCATGAGCTAGATGGAAATGTTATGAAATGTGTCCGTGACCAAAATGGGAATCATGTAATACAGAAGTGCATTGAATCTATTCCAACTAAAAACATTGACTTTATAATATCTGCATTTCATGGTCAAGTTGCTATTCTATCTACGCATCCTTATGGTTGCCGAGTCATACAGAGAGTTCTGGAGCATTGTTCAGATGAGGCTCAATGTCAGTTTATTGTGGATGAAATCTTGGAGTCAGTTTTTACTCTTGCTCAGGACCAGTATGGTAACTATGTTACTCAGCATGTGTTGGAGAGAGGAAAGCCTCAGGAAAGGAGCCAAATTATTAGCAAGCTGTCAGGACATATTGTCCAATTAAGCCAGCATAAATTTGCATCAAATGTTGTTGAGAAATGTTTGGAGTATGGTGATGCCACTGAACAGCAGTTGTTAATTGCAGAGATTGTTGGACATGACaaacaaaatgataatttattgACAATGATGAAAGACCAATTTGCAAATTATGTGATCCAGAAGGTTCTTGAGATCTGTTCTGAAAATCAGCGAGCAATGTTACTTTCTCGCATAAGACTTCATGCTCATGCTTTGAAGAAATACACTTATGGAAAACACATTGTGGCTCGGTTTGAACAGCTACTCGGAGAAGGTGTGTACTCCTAG 2745 0.4124 MATESPIRISEAGGKWPSLKEAATFGSPSRHMATEDLGIFLNGHRFHGSGKDVVPNRSGSAPPSMEGSFLAIENLLSQNTTRNASLGSLNRAMQKYDSGKGSSHLSRGTLATHKEESEDDSTQQLYDNELDKASGKWNRQDVASTSSQHNNGDLPHAMSPVYNKSLGVVDELIDVDSGSSSSHDPPVTTVDAVKPSIGADDIRLSSTVNSLATVTSSSSLNSTGSMGFKDLDVTIVESQLRALSVSNLPNSESQSYEDKWKNSCQNNLMQHQQQNYPCEVPSTNSQSEKCAYIGMEQFLHTPSKFSSDVQPVLQSSGFTPPLYATAAAAYMTSTNPFYTNLQASGMYSPQYVGAYPFNPTAVPPYIAAYPPHGSVPLVDGATGSSFAPQAPGVSSTAGNISHGAEMIHANKFFGQFGFPLQPSFGDPIYMQYHQQPFVEGYGVSGHLLAPRTSVGGQIGPFDSQKRPTSGAYLDDKKLHNQRSGANLNSNRGGLILPGYFGHPSNMGFVTQYPSSPLSRPVLSGYPEGSPGLLGGRNEMKLSPASGRNGGLLSGWQGQRAFDSDHDPKIAIFLEELKSGKGRRFELSDIIGHIVEFSTDQHGSRFIQQKLESCGVEEKELVFKEVLPHTSKLMTDVFGNYVIQKFFEYGSPEQRKELANRLLGQILPLSLQMYGCRVIQKALEVIDIEQKAQLVHELDGNVMKCVRDQNGNHVIQKCIESIPTKNIDFIISAFHGQVAILSTHPYGCRVIQRVLEHCSDEAQCQFIVDEILESVFTLAQDQYGNYVTQHVLERGKPQERSQIISKLSGHIVQLSQHKFASNVVEKCLEYGDATEQQLLIAEIVGHDKQNDNLLTMMKDQFANYVIQKVLEICSENQRAMLLSRIRLHAHALKKYTYGKHIVARFEQLLGEGVYS 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0714 914 ProSiteProfiles Pumilio RNA-binding repeat profile. 696 731 IPR001313 GO:0003723
Ssu6g0714 914 CDD Pumilio 583 903 IPR033712 GO:0003723
Ssu6g0714 914 ProSiteProfiles Pumilio RNA-binding repeat profile. 732 768 IPR001313 GO:0003723
Ssu6g0714 914 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 52 907 - -
Ssu6g0714 914 ProSiteProfiles Pumilio RNA-binding repeat profile. 588 623 IPR001313 GO:0003723
Ssu6g0714 914 SMART pum_5 847 882 IPR001313 GO:0003723
Ssu6g0714 914 SMART pum_5 696 731 IPR001313 GO:0003723
Ssu6g0714 914 SMART pum_5 624 659 IPR001313 GO:0003723
Ssu6g0714 914 SMART pum_5 769 804 IPR001313 GO:0003723
Ssu6g0714 914 SMART pum_5 732 768 IPR001313 GO:0003723
Ssu6g0714 914 SMART pum_5 805 840 IPR001313 GO:0003723
Ssu6g0714 914 SMART pum_5 660 695 IPR001313 GO:0003723
Ssu6g0714 914 SMART pum_5 588 623 IPR001313 GO:0003723
Ssu6g0714 914 Pfam Pumilio-family RNA binding repeat 774 806 IPR001313 GO:0003723
Ssu6g0714 914 Pfam Pumilio-family RNA binding repeat 736 771 IPR001313 GO:0003723
Ssu6g0714 914 Pfam Pumilio-family RNA binding repeat 592 626 IPR001313 GO:0003723
Ssu6g0714 914 Pfam Pumilio-family RNA binding repeat 851 884 IPR001313 GO:0003723
Ssu6g0714 914 Pfam Pumilio-family RNA binding repeat 809 842 IPR001313 GO:0003723
Ssu6g0714 914 Pfam Pumilio-family RNA binding repeat 707 731 IPR001313 GO:0003723
Ssu6g0714 914 Pfam Pumilio-family RNA binding repeat 664 697 IPR001313 GO:0003723
Ssu6g0714 914 Pfam Pumilio-family RNA binding repeat 631 660 IPR001313 GO:0003723
Ssu6g0714 914 ProSiteProfiles Pumilio RNA-binding repeat profile. 805 840 IPR001313 GO:0003723
Ssu6g0714 914 ProSiteProfiles Pumilio RNA-binding repeat profile. 841 882 IPR001313 GO:0003723
Ssu6g0714 914 ProSiteProfiles Pumilio RNA-binding repeat profile. 769 804 IPR001313 GO:0003723
Ssu6g0714 914 ProSiteProfiles Pumilio RNA-binding repeat profile. 660 695 IPR001313 GO:0003723
Ssu6g0714 914 MobiDBLite consensus disorder prediction 138 154 - -
Ssu6g0714 914 ProSiteProfiles Pumilio RNA-binding repeat profile. 624 659 IPR001313 GO:0003723
Ssu6g0714 914 SUPERFAMILY ARM repeat 583 904 IPR016024 -
Ssu6g0714 914 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 568 908 IPR033133 GO:0003723
Ssu6g0714 914 Gene3D - 570 909 IPR011989 -
Ssu6g0714 914 PANTHER PUMILIO HOMOLOG 6, CHLOROPLASTIC 52 907 - -
Ssu6g0714 914 MobiDBLite consensus disorder prediction 95 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0714 Ssu-Chr6 11259719 11267891 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0714 K17943 - gmx:100819166 1554.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0714 6 11259719 11267891 Ssu1g1468 1 33920542 33922515 PCT