Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1468 ATGGCAACTGAGAGTCCAATTAGAATCTTAGAAGCTGGGGGTAAATGGCCTTCTCATAAGGAAGCTGCAGCTTTCGGTATGCCATCTCGTAACATGGTGACAGAGGATTTGGGTATGCTTCTGAAGGGCCATAGATTCCATGGTGGTGGAAAGGATGTGGCACCTAATCGCAGTGGCAGTGCACCTCCCAGCATGGAAGGCTCATTTCTGGCCATAGAAAACCTCTTACCCCAGCAGAACACCACCCAGAATGCAAGCTTGGCAACTCTAAGCACAGTTATGCAAAAATGTGAGTCTGAAAAACAATTGCGAGCTGATCCAGCTTATTTGGCATATTATAGTTCCAATGTCAACCTAAACCCTAGACTTCCTCCCCCACTTACGTCCTGGGAAAATCGCCATCTAGGATGTCATATTGGCAGTTTTAGAAATAATTGGAGATTGTCTACTACAGATGATAGCGGTAAAAGTTCTTTACATTTGCCTCAAATGACTCTTTCCACCCACAAGGAGGAGTCTGAAGATGATTCACCCCAACAGCCATATGATGACGAATTAGTTAAGACAAGTGGAATATGGCGTAGACCTGATACAGCTTCATTGGCATCTCAGCACAAAAATATGGTTGATTTAATTCAGGAAGATTTTCCTCGCACCATGTCACCTGTATACAATAAGTCTCTTTCCGTAATTCACGGACTAGTGGATAAACCAATTGACTTAGAAGCCGGTTCTAGTTCTTCTCATGACCCCCTTGTCACTACAGTAGAGGCTGCTAAACCTACTGTGGGTGCAGATGATATAAGGGTGTCATCAAGTATTGATACCCATGCCCCTGTTGCAAGCTCTTCATCTTTTGAATCCACAGGAAGCATTGGTGTTAGTGACTTAGACGTTGCAACTGTTGAGTCTCGGCTAAAGGCTCTTGGTGTATCTAATCTACCAAATTCAGAAACTCTGAGTTACGATGAAAAATGGAAGACCAGCTACCAGAACAATTTGATGCAACGCCAGGGATTCCAGCAACAAAATAATCCGTGTGATGTTCCTAGTGCCAATTCTCAAAATGTAAATTCTGTGTATGTTGGTAGGGAACAGTTTCCTTATAATTCCAGCAAGCTCTCCAATGTCCAGCCTGTACTGCAGTCATCTGGGTTTACACCTCCTCTATATGCCACAGCAGCTGCTTATATGACCTCAGCAAATCCATTTTACACTAATATGCAGGCCTCAGGTATATATACTCCACAATACGTTGGTGGATACACCGTAAATCCCACAGCTTTTCCTCCATATGTTACTGCATACCCTCCTCATGGTGCTGTACCACTTGTTGTTGATGGGGCTACTAGTTCTAGTTATACTCCACTAACACCAGGGGTTTCAACTGGGGCAAACATTTCGCATGGAGTTGAAATGGTACAGACAAATAAGTACCTTGGGCAATTTGGATTTCCTCTACAGCCTTCTTTTGGTGATCCTATGTACATGCAATATCATCAGCAACCTTTTGTGGAGGGATATGGTATTTCTGGTCATTTTGATCCTTTGGCACCTAGAGCTAGTGGTGTTAGCCAAATTAGTCCTTATGATTCACAAAAAGGCCCAGTACTGGGGCTTATTTGGATGATAAAAAATTACCTGATCAGAGAACTGGTGCTAATATGA 1668 0.4317 MATESPIRILEAGGKWPSHKEAAAFGMPSRNMVTEDLGMLLKGHRFHGGGKDVAPNRSGSAPPSMEGSFLAIENLLPQQNTTQNASLATLSTVMQKCESEKQLRADPAYLAYYSSNVNLNPRLPPPLTSWENRHLGCHIGSFRNNWRLSTTDDSGKSSLHLPQMTLSTHKEESEDDSPQQPYDDELVKTSGIWRRPDTASLASQHKNMVDLIQEDFPRTMSPVYNKSLSVIHGLVDKPIDLEAGSSSSHDPLVTTVEAAKPTVGADDIRVSSSIDTHAPVASSSSFESTGSIGVSDLDVATVESRLKALGVSNLPNSETLSYDEKWKTSYQNNLMQRQGFQQQNNPCDVPSANSQNVNSVYVGREQFPYNSSKLSNVQPVLQSSGFTPPLYATAAAYMTSANPFYTNMQASGIYTPQYVGGYTVNPTAFPPYVTAYPPHGAVPLVVDGATSSSYTPLTPGVSTGANISHGVEMVQTNKYLGQFGFPLQPSFGDPMYMQYHQQPFVEGYGISGHFDPLAPRASGVSQISPYDSQKGPVLGLIWMIKNYLIRELVLI 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1468 555 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 44 531 - -
Ssu1g1468 555 PANTHER PUMILIO HOMOLOG 5 44 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1468 Ssu-Chr1 33920542 33922515 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1468 K17943 - gmx:100811036 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0714 6 11259719 11267891 Ssu1g1468 1 33920542 33922515 PCT