Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0707 ATGGAGGTAACCAAAGTGAAGGAAACTAAAATTGTTCTGACGAAACCCTTCTCATTGGAAGGTGAATCAGATTTAGAACCGTCTTATAGAGCCCCCAATCTCCTACGTCGCTTGTTAAGTTTACTCAAGAACGTGCGGCCAGGATCAGATCTCACACACTTCCAGCTTCCGCCAGTGTTTAATTTCCCAAAATCTCAACTTCAATGCTACGGTGAATCAGTGTACTGCACATCTTCCTACTTGCTGAGCAAAGTCAACAGTGGACAAAGTCCACTGGACAGGTTCACATCTGTGGTAGCATGGAGCATATCTACCACACGCCCTACATCTTTTGGGGTTGCTCCTTATAACCCCACTCTGGGAGAGACCCACCATGTTTCTAAGGGCAATCTCAATGTGCTACTTGAACAGGTTTCACTCAACCCTCCAGTATCTGCTCTCCATGCAACAGATGAGAAAGAAAACATTGAAATGATATGGTGCCAGCAACCTGTTCCAAAGTTTCGTGGTACATCTATTGAAGCTCAAGTGCATGGTAAACGGCTGCTGATGCTCCTAAATCATGGGGAAACATATGAAATGAATAGTCCTCACCTTTCAATTAGAATTCTTCCGGTTCCAGGGATTGATTGGGTTGGCAATGTTAATATACGGTGCCTAGAGACAGGTCTTGTGGCTGAGTTATCATACAGATCAAGCCATTCTTTTTTAGGATTTGGGGGAAATCGAAAATTGATCAAAGGGAAGATCCTTGACTCATCCTTATTCAAAGTTCTCTACGAAGTTGATGGTCATTGGGATAAGACAGTTAAAGTGAAGGATACAAATAGTGGAGAAGTCAGAGTGATATATGATGCAAAAGAAGTCATTTCAGGGCTCAAAACTCCTATTATCAAGGATGCGGAGAGAGTGTGGCCAACCGAATCAGCCCTTGTTTGGAGTGAGTTGAGCCAAGCCATTATGAGCAAAGACTGGGAGACAGCAAGAGAAGCAAAGCAGGGTGTGGAGGAAAGACAGAAGAAGATGTTGAGAGAAAGAGCCATGAAAGGAGAGACTTGGATTCCTAAGAATTTTAGGGTGTCTTACAGCAAAGACAGGTGGGAATGGGACTGTTCACCCACTCATAAATGGGTTCCTGCCGCCCCCATCATAGCTCAGTAA 1161 0.441 MEVTKVKETKIVLTKPFSLEGESDLEPSYRAPNLLRRLLSLLKNVRPGSDLTHFQLPPVFNFPKSQLQCYGESVYCTSSYLLSKVNSGQSPLDRFTSVVAWSISTTRPTSFGVAPYNPTLGETHHVSKGNLNVLLEQVSLNPPVSALHATDEKENIEMIWCQQPVPKFRGTSIEAQVHGKRLLMLLNHGETYEMNSPHLSIRILPVPGIDWVGNVNIRCLETGLVAELSYRSSHSFLGFGGNRKLIKGKILDSSLFKVLYEVDGHWDKTVKVKDTNSGEVRVIYDAKEVISGLKTPIIKDAERVWPTESALVWSELSQAIMSKDWETAREAKQGVEERQKKMLRERAMKGETWIPKNFRVSYSKDRWEWDCSPTHKWVPAAPIIAQ 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0707 386 Gene3D - 302 350 - -
Ssu6g0707 386 Pfam Oxysterol-binding protein 40 315 IPR000648 GO:0008289
Ssu6g0707 386 SUPERFAMILY Oxysterol-binding protein-like 38 370 IPR037239 -
Ssu6g0707 386 Gene3D - 117 295 - -
Ssu6g0707 386 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 1 384 IPR000648 GO:0008289
Ssu6g0707 386 PANTHER OSBP(OXYSTEROL-BINDING PROTEIN)-RELATED PROTEIN 4C 1 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0707 Ssu-Chr6 11037500 11042156 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0707 K22285 - gmx:100813302 727.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0707 6 11037500 11042156 Ssu6g0707 6 11037500 11042156 ECH
Ssu6g0707 6 11037500 11042156 Ssu1g1485 1 34665810 34674748 PCT