Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0701 ATGCCGCCGGCTCTGATGGATCCGCCGTTGCCGGAATCATCGTCGGTGCCGGCGTTAAGATCCGACAGCGTTTCTCCGGGATCGGCGCCGGAGAGTCGGCGATTCGGGGATCTTAGAGGTTTGCAGTGGCGTATGAATCTTGGGGTGTTgccatcttcttcttcttcttcttcttccattgaTGATCTTCGTCGTGCCACCGCTAATTCTAGAAGGAGGTATGCCAGTTTGAGAGGGCGCCTCCTGGTTGATCCGCATATTCCAAAGGATGGAAGTAGTTCACCCGATCTTGTCATGGACAATCCACTTTCACAAAATCCAGACAGTACATGGAGTCGCTTTTTTCACAATGCAGAGATGGAGAGGATGGTTGATCAGGATTTATCACGTTTATACCCAGAACATGGCAACTATTTCCAGACGCCAGGATGCCAAGGCATATTGAGACGAATTTTATTACTATGGTGTCTCAGACACCCAGAGTGTGGTTATAGACAAGGAATGCATGAATTACTTGCTCCAGTGCTTTATGTTCTCCAGTTTGATGTGGAGTGTCTTTCGGAAGTTCGAAAGCTTTATGAAGATCACTTCACAGACAGATTTGATGACCTCATTTGTCAAGAGAATGATCTTTCTTACAGCTTTGATTTTAGAAAATCTTCAGATATGACGGAGGATGAAATTGACTCCAACAGAAATGCAGTGAAAATCAAGAGTCTTGATGAGCTGGATCCTAAGATACAGAACATTGTATTGCTAAGTGATGCTTATGGGGCTGAAGGTGAACTGGGCGTTGTTTTATCTGAGAAATTCATCGAACATGATGCTTACTGTATGTTTGATGCTTTAATGAATGGAGCTTGTGGTTCAATTGCAATGGCCAATTTCTTCTCTTATTCCCCTTTGCCTGGGTCCCATACTGGCTTGCCTCCTGTAATTGAAGCTTCTGCTGCACTGTATCATTTGTTGTCTCATGTGGATTCATCTCTTCATGGCCATCTCATTGATCTCGGGGTTGAACCCCAGTACTTTGCTCTCCGCTGGTTGCGAGTTTTATTTGGACGGGAATTTTCACTCAGCAACCTCTTGATAATCTgggatgaaatatttttatcagtTAATAGTAAAGTGGAAAAACATGCTGAGGACAATGCAGACTCTGGTTTTAGGATCTTACATTCGTCTCGTGGAGCATTTATcgcagctatggctgtagcaaTGATGCTTCATTTAAGATCTTCACTACTTGCAGCTGAAAATCCTACAACCTGTCTCCAGAGATTATTAAACTTCCCTGAGGACACTAACGTTGAAAAACTAATAGAGAAGGCTAAATCCTTGCAGGCTCTTGCATTAAGTGCTGAGATTTCATCCTCAACGCCTTCATTTGTTGAGCATCATAACCAGGGTAAATCAGTTATTGCAAGATCTTGCACCCTTTCATCTGAATCAATTTCACCAAAAACTCCTCTGAATTTGGTACCTGATAGCTACTGGGAAGAAAAGTGGAGAGTTGTCCACAAGGCTGAAGAACTCAAACAAGATGGAGCAGAAAAACAGGTTCCAACTCGGAAGAAGGGATGGACAGATAAGGTAAAGTTCAGTTTGAAAAGAACAGAATCGGACCCCTCTTCATCAAAGATTAAGAATGGTAAAAAGGAATCCAAGGCATCGGTGAGGCACAGTTTGTTAGAAGATCTTTCTAAGGAACTTGGCTTTGAGGAAGATACTGAAAAACTGTGCTGTCATGCTAATCTGTCTGCAACAGTTGAAGAGGAGCAACGGGAAAATGGCTCCGAAGGCAGCAATAACTACTCTGCGGAGGATAGATGTCTAAGTCGAAACACAAGCAGTGAGGAAAACTCACCTGTTATCTCTTGCCCATCTAGTCCTCCTAACGAGGCCAATGATTGCAAAAATGACTCAGAAAAAAGTAGTGTTGGGTCTAATTTATCCCTTGATGAAATTAATGAAACTTCACTTACTAGTCCCATTGATTCACCTCTTCCAATCTCTGATCATCCTGAAAATGTATCTCAGACATCAGGgagcaataatattaataattccGCAGGAAATTCAACCACACATTCTAAGGAGAGAAAACTGAATAAATTTCAGTGGCTTTGGAAGTTTGGGCAGAATAATGGCGAGTTTATATCAGAGAAAGGAGGAGAAGCTTCTGAGGCTGTAAAACCTGCCAACAATTGTAATAATCAAAGTAACACAATACCCTCTTCTACAGCCAATGGACATTGTAGTTCTGTTAGTTGCAAAGGGGAATCTACAGACCAGAATGTGATGGGCACTTTGAGGAATATTGGGCGGTCAATGCTTGAGCATATCCAGGTGATTGAGTGTGCTTTCCAACAAGACCAGGGCCAGGGAACATCATTGGATAACATGTCTAAAAATGTTTTGGTTGGTAAAGGGCAGGTTACTGCCATGTCAGCTCTCGAGGAGCTCCGTAAAATTAGCAATCTTTTGTCTGAGATGTGA 2499 0.4126 MPPALMDPPLPESSSVPALRSDSVSPGSAPESRRFGDLRGLQWRMNLGVLPSSSSSSSSIDDLRRATANSRRRYASLRGRLLVDPHIPKDGSSSPDLVMDNPLSQNPDSTWSRFFHNAEMERMVDQDLSRLYPEHGNYFQTPGCQGILRRILLLWCLRHPECGYRQGMHELLAPVLYVLQFDVECLSEVRKLYEDHFTDRFDDLICQENDLSYSFDFRKSSDMTEDEIDSNRNAVKIKSLDELDPKIQNIVLLSDAYGAEGELGVVLSEKFIEHDAYCMFDALMNGACGSIAMANFFSYSPLPGSHTGLPPVIEASAALYHLLSHVDSSLHGHLIDLGVEPQYFALRWLRVLFGREFSLSNLLIIWDEIFLSVNSKVEKHAEDNADSGFRILHSSRGAFIAAMAVAMMLHLRSSLLAAENPTTCLQRLLNFPEDTNVEKLIEKAKSLQALALSAEISSSTPSFVEHHNQGKSVIARSCTLSSESISPKTPLNLVPDSYWEEKWRVVHKAEELKQDGAEKQVPTRKKGWTDKVKFSLKRTESDPSSSKIKNGKKESKASVRHSLLEDLSKELGFEEDTEKLCCHANLSATVEEEQRENGSEGSNNYSAEDRCLSRNTSSEENSPVISCPSSPPNEANDCKNDSEKSSVGSNLSLDEINETSLTSPIDSPLPISDHPENVSQTSGSNNINNSAGNSTTHSKERKLNKFQWLWKFGQNNGEFISEKGGEASEAVKPANNCNNQSNTIPSSTANGHCSSVSCKGESTDQNVMGTLRNIGRSMLEHIQVIECAFQQDQGQGTSLDNMSKNVLVGKGQVTAMSALEELRKISNLLSEM 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0701 832 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 37 333 IPR035969 -
Ssu6g0701 832 MobiDBLite consensus disorder prediction 535 559 - -
Ssu6g0701 832 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 104 290 - -
Ssu6g0701 832 SMART tbc_4 25 384 IPR000195 -
Ssu6g0701 832 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 2 760 - -
Ssu6g0701 832 Pfam Rab-GTPase-TBC domain 273 372 IPR000195 -
Ssu6g0701 832 Pfam Rab-GTPase-TBC domain 121 201 IPR000195 -
Ssu6g0701 832 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 2 760 - -
Ssu6g0701 832 MobiDBLite consensus disorder prediction 590 700 - -
Ssu6g0701 832 MobiDBLite consensus disorder prediction 1 36 - -
Ssu6g0701 832 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 308 448 IPR035969 -
Ssu6g0701 832 MobiDBLite consensus disorder prediction 599 697 - -
Ssu6g0701 832 Gene3D - 312 456 - -
Ssu6g0701 832 ProSiteProfiles TBC/rab GAP domain profile. 33 373 IPR000195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0701 Ssu-Chr6 10948389 10952879 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0701 K18469 - gmx:100816501 1431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0701 6 10948389 10952879 Ssu6g0701 6 10948389 10952879 ECH
Ssu6g0701 6 10948389 10952879 Ssu1g1488 1 34820677 34825443 PCT