Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1488 ATGCCGCCGGCCCTGTCGGATCCGTTGTCGGCGTCTCCGGCGAGTTCCGACGCCGTTTCGCGGCGATCGGCGCCGGAGAATCGGCGATTCGGTGATCTTAGAGGGTTGCAGTGGAGAATAAATCTTGGGGTGTTACCGTCTTCGACTTCAACATCAATTGATGATATTCGTCGAGTCACTGCTAATTGTAGAAGGAGGTATGCTAGCTTGAGAAGGCGCCTTCTGGTTGAACCGCATGTTCCAAAGGATGGAACTAATTCACCCAATCTTGTCATTGACAATCCGCTTTCACAAAATCCAGATAGTACATGGAGTCGCTTTTTCCGCAATGCAGAGCTGGAGAGAATGGTTGATCAGGATTTATCACGTTTATACCCAGAACATGGCAGTTATTTTCAGACACCAGGATGCCAAAGCATGTTGAGACGAATTTTATTACTGTGGTGTCTCAGGCACCCAGAATGTGGTTATAGACAAGGAATGCATGAATTACTTGCTCCTCTGCTTTATGTTCTCCAAGTTGATTTGGAGCGTCTTTCGGAAATTCGGAAGCTTTATGAAGATCACTTTACAGACAGATTTGATGGCCTTTTATATCAAGAGAATGAGCTTTCTTACAGCTTTGATTTTAGAAAATCTCCAGAATTGATGGAGGATGAATTTGGTTCCTGTGGAAATGCCGTGAAAGTCAGTAGTCTTGATGAACTTGATCCTGAGATACAGACCATTGTATTACTAAGTGATGCTTATGGAGCTGAAGGTGAGCTGGGTGTTGTTTTATCTGAGAAATTCATGGAACATGATGCATACTGTATGTTTGACGCTTTGATGAACGGGGACCATGGTTCAGTTGCAATGGCCAATTTCTTCGCTTCATCCCCTGTATTGGGGTCCCATAGTGGCCTGCCTCCTGTGATTGAAGCTTCTACTGCATTGTATTATTTGTTGTCTCTTGCAGATTCATCTCTCTATAGCCATCTTTTTGATCTTGGGGTTGAACCCCAGTACTTTTCTCTTCGATGGTTGCGAGTTTTATTTGGACGAGAGTTTTCACTTGCCAACCTCTTGATCATCTGGGACGAGATCTTTGCATCAGAGAATAGTAGCATGGAAAAAGGTGCTGATGACAGTGAGTTCAGGATCTTAAATTCACCTCGTGGAGCATTTATCTCAGCTATCGCAGTAGCAATGTTACTTCATTTAAGATCTTCACTACTTGCAACTGAAAACCCTACAAGGTGTCTCCAGAGATTATTAAACTTTCCTGAAgacattaatattgaaaaactaCTAGAGAAGGCTAAATCCTTGCAGTCTCTTGCACTGAGTGTTGATATTTCATCCTCATCACTTTTGTTTATAGGGTCTCATCACCAAAGTAAATCGATGTTTAGTAGATCTGTGACCCTTCCATCCGAATCTGTGTCTCCGAAAACTCCTCTGAATTTGTTACCTGATAGCTACTGGGAAGAAAAGTGGAGAGTAGCCCACAAGGCTGAAGAACTTAGGCAAGATGGTCTAGAAAAACAGGTTCCCACTCGGAAAAAGGGATGGACAGAAAAGGTAAAACTCCGGTTGAGAAGAGCAGAATCTGACCCTCCTTTGTCAAGGATTCAGAGTGGCAAAAATTTTAGGCGCAGTTTGTTGGATGATCTTCGCAAGGCACTTGGGTCGGAGGAAGATGCAAAGCAAATGCAGCCAGATGAAACCCTAAGCCAGCATGATAATCTTTCTGAAACAGTTGAAGTACAAGAAGAAGATAGTGGCTGTAAATGTAATGGCGACAACAATTACTTGTCTGATGATAGATCTCCAAGTGGAAATTCTGGCAGCGAGGAAGACTTGTCTATATTTTCTGACCCAACTAGTCCCCCTAATGAGGCCAATGATCATGAAGTTACCTCGGAGAAAAGTAGTGTTGCATCTAATTCATTCCTTGATGAATGCAATGAAACATCAGGTACTGCTTCACCCTTTCCTTTCTCGGATCCTCCTGAGAACATTTCTCAGACATCACAGTGCAATACAGGAAATTCTGAATGCAATGAAGCTTCAGGTACCAGTTTACCCTTTCCAATGTCGGATCCTCCCGAGAACATTTCTTGGACATGCAATGAAACTTCAGATACCAGTCCCAATGATCCACCCCTTCCAATATCCGATCCTCCCGAGAACATACCTCCAACACTGCCAGGGAGCAATAATGACGATGCAGGAAATACAGCCGCACCTCCTAAAGAGAAAAAACAGAATAAGTTGCAGTGGCTTTGGCTGTTTGGACGGAATACTGCTGAGGCTGTGTCTGACAAAGTAGGAGGTGCCGCCGCCAAAGCTGCCAACCATAGTAGTACTCAAAATAATACTCCACAACCAGCAGCAAATGAGCATGGTAGTTCTGCTGGTTTCAGAGGAGAATCTGTCGACCAGAATGTGATGGGCACTTTGAAGAATATTGGACAGTCTATGCTTGACCATATTCAGGTAATTGAATCTGTTTTCCAACAAGACCGCAAAGGCCAAGTTACTGCCGTGACAGCTCTCAAGGAGCTTCGGAAAATTAGCAATCTTCTGTCTGAGATGTGA 2583 0.4359 MPPALSDPLSASPASSDAVSRRSAPENRRFGDLRGLQWRINLGVLPSSTSTSIDDIRRVTANCRRRYASLRRRLLVEPHVPKDGTNSPNLVIDNPLSQNPDSTWSRFFRNAELERMVDQDLSRLYPEHGSYFQTPGCQSMLRRILLLWCLRHPECGYRQGMHELLAPLLYVLQVDLERLSEIRKLYEDHFTDRFDGLLYQENELSYSFDFRKSPELMEDEFGSCGNAVKVSSLDELDPEIQTIVLLSDAYGAEGELGVVLSEKFMEHDAYCMFDALMNGDHGSVAMANFFASSPVLGSHSGLPPVIEASTALYYLLSLADSSLYSHLFDLGVEPQYFSLRWLRVLFGREFSLANLLIIWDEIFASENSSMEKGADDSEFRILNSPRGAFISAIAVAMLLHLRSSLLATENPTRCLQRLLNFPEDINIEKLLEKAKSLQSLALSVDISSSSLLFIGSHHQSKSMFSRSVTLPSESVSPKTPLNLLPDSYWEEKWRVAHKAEELRQDGLEKQVPTRKKGWTEKVKLRLRRAESDPPLSRIQSGKNFRRSLLDDLRKALGSEEDAKQMQPDETLSQHDNLSETVEVQEEDSGCKCNGDNNYLSDDRSPSGNSGSEEDLSIFSDPTSPPNEANDHEVTSEKSSVASNSFLDECNETSGTASPFPFSDPPENISQTSQCNTGNSECNEASGTSLPFPMSDPPENISWTCNETSDTSPNDPPLPISDPPENIPPTLPGSNNDDAGNTAAPPKEKKQNKLQWLWLFGRNTAEAVSDKVGGAAAKAANHSSTQNNTPQPAANEHGSSAGFRGESVDQNVMGTLKNIGQSMLDHIQVIESVFQQDRKGQVTAVTALKELRKISNLLSEM 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1488 860 MobiDBLite consensus disorder prediction 778 795 - -
Ssu1g1488 860 ProSiteProfiles TBC/rab GAP domain profile. 28 366 IPR000195 -
Ssu1g1488 860 Pfam Rab-GTPase-TBC domain 114 174 IPR000195 -
Ssu1g1488 860 Pfam Rab-GTPase-TBC domain 265 367 IPR000195 -
Ssu1g1488 860 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 9 801 - -
Ssu1g1488 860 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 32 279 IPR035969 -
Ssu1g1488 860 MobiDBLite consensus disorder prediction 559 749 - -
Ssu1g1488 860 MobiDBLite consensus disorder prediction 771 805 - -
Ssu1g1488 860 SMART tbc_4 20 409 IPR000195 -
Ssu1g1488 860 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 98 281 - -
Ssu1g1488 860 MobiDBLite consensus disorder prediction 1 26 - -
Ssu1g1488 860 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 9 801 - -
Ssu1g1488 860 Gene3D - 305 445 - -
Ssu1g1488 860 MobiDBLite consensus disorder prediction 715 729 - -
Ssu1g1488 860 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 302 438 IPR035969 -
Ssu1g1488 860 MobiDBLite consensus disorder prediction 590 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1488 Ssu-Chr1 34820677 34825443 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1488 K18469 - gmx:100812967 1424.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1488 1 34820677 34825443 Ssu1g1488 1 34820677 34825443 ECH
Ssu6g0701 6 10948389 10952879 Ssu1g1488 1 34820677 34825443 PCT