Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0699 ATGGGAACGTTCCAGAGCTTAAGAAAGGCCTACGGTGCTCTCAAAGACTCCACCAAGGTTGGCCTAGCCAAGGTCAATAGCGAATACAAGGAATTGGATATTGCAATTGTGAAGGCTACCAGTCACGTGGAATACCCTCCTAAGGAACGTCATGTTCGAAAAATATTCTATGCAACTTCAGCACACCAACCACGGGCAGATGTGGCTTACTGCATACACACACTTGCCAAGAGACTTTCTAAGACGCGGAATTGGATAGTTGCTATAAAGACATTGATAGTCATTCATAGGATATTGAGAGAGGGTGATCCTAGTTTCAAAGAAGACCTCAAAAACTACGCGCGCAGGGGAAGTTTTCTTCAAATATCCAATTTCAAAGATGACTCAAGCCCTCAAGCTTGGGACTGTTCTGCATGGGTTCGAACCTATGCACTATTTTTAGAAGAAAGGCTTGAATGTTCTAGAGTCCTTGAATATGACATCGAGTCTGAGGGTTTAACAAAATCATCACCGCCTAAGGCTCTAACTCAGGGACATAACAGAACACGCACGTTGACTAGTGAAGAGCTATTGGAGCAGCTGCCTGCACTGCAGCAACTTGTGTACCGCCTAATTGCTTGTCAGCCTGAAGGATCGGCTTTCAGCAATTATCTAATACAGTATGCACTGGCCTTGTTATTGAAAGAGAGCTTCAAAATATATTGTGCCCTGAATGATGGAATCATAAATCTTGTGGATGTGTTCTTTGATATGCCAAAGTACGATGCAGTGAAGGGGTTGCATATTTATAAAAGAGCTGGCCAACAGGCTGAAAATCTTGCTGACTTCTATGAATACTGCAAGGGATTGGACCTTGCTAGGAATTTTCAATTTCCAACCTTGAGACAGCCACCTGCTTCTTTTCTTGCCACGATGGAAGAATACATCAAAGAAGCACCCCAGACTGTTACTAAGAGACGGGAGTATCACGAAAATGATCAATCACctgaaaaagaagaagcagaACCCAAAGAATCTGAAGAGGCTCAAGCAAATGAGAAACCAGATGAAGAAGTCAATGAGGAAGAACCGGTAGATAAAGACGAAACACAGCCTAAGGAAGAAGAAGCTGAACTTCCTCCTTTGATATCAACTGATGCTACTGATGATTTGCTGGGTCTAAATGAAATAAATCCAAAAGCTCAAGAACTAGAAGAAAGCAATGCTTTGGCGCTTGCAATTGTACCAGCCGGCGGAAATAACTCGAGCAATCTTGCTTTGACTAACATAAGCGGAACTTCTGGTTGGGAACTTGCACTGGTTACAACACCAAGTAACCATACCAGCCAAGCGCCTGATCGGAAAATgGCTGGTGGGTTTGACAAGCTATTACTAGACAGTTTGTACGAAGATGACAATGCCAGGAGACAACTTCAACTCCGAAATGCAGGCTATGGATATGGGGGAATGGATACACATAATCCATTCGATCATTATAATCAGCACGATCCATTTGCAATGTCCAACAACATCGCGCCTCCACCCAATGTGCAAATGGCATTCATGGCGAAGCAACAGCAACAGCAACAAATGATGTtccaacaacagcaacaatatAACATGATGATGGTCCCTTACCAGTATCCACAGACTCAATACCCCCAACAAACGCCAGTTATGGGTTCTTCTAATCCATTTGCTGATCCCTTACCCATGTCTAGCTATCCTTATAATTCCATACACCATCAAGGAAACTACCATTTAATGTAG 1749 0.4225 MGTFQSLRKAYGALKDSTKVGLAKVNSEYKELDIAIVKATSHVEYPPKERHVRKIFYATSAHQPRADVAYCIHTLAKRLSKTRNWIVAIKTLIVIHRILREGDPSFKEDLKNYARRGSFLQISNFKDDSSPQAWDCSAWVRTYALFLEERLECSRVLEYDIESEGLTKSSPPKALTQGHNRTRTLTSEELLEQLPALQQLVYRLIACQPEGSAFSNYLIQYALALLLKESFKIYCALNDGIINLVDVFFDMPKYDAVKGLHIYKRAGQQAENLADFYEYCKGLDLARNFQFPTLRQPPASFLATMEEYIKEAPQTVTKRREYHENDQSPEKEEAEPKESEEAQANEKPDEEVNEEEPVDKDETQPKEEEAELPPLISTDATDDLLGLNEINPKAQELEESNALALAIVPAGGNNSSNLALTNISGTSGWELALVTTPSNHTSQAPDRKMAGGFDKLLLDSLYEDDNARRQLQLRNAGYGYGGMDTHNPFDHYNQHDPFAMSNNIAPPPNVQMAFMAKQQQQQQMMFQQQQQYNMMMVPYQYPQTQYPQQTPVMGSSNPFADPLPMSSYPYNSIHHQGNYHLM 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0699 582 SMART enth_2 30 161 IPR013809 -
Ssu6g0699 582 CDD ANTH_N 32 153 - -
Ssu6g0699 582 PANTHER CLATHRIN ASSEMBLY PLANT-LIKE PROTEIN 1 569 - -
Ssu6g0699 582 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Ssu6g0699 582 MobiDBLite consensus disorder prediction 359 373 - -
Ssu6g0699 582 MobiDBLite consensus disorder prediction 318 346 - -
Ssu6g0699 582 PANTHER CLATHRIN ASSEMBLY PROTEIN 1 569 IPR045192 GO:0048268|GO:0072583
Ssu6g0699 582 SUPERFAMILY GAT-like domain 179 311 - -
Ssu6g0699 582 SUPERFAMILY ENTH/VHS domain 31 161 IPR008942 -
Ssu6g0699 582 MobiDBLite consensus disorder prediction 318 377 - -
Ssu6g0699 582 Pfam ANTH domain 31 311 IPR011417 GO:0005543
Ssu6g0699 582 Gene3D - 6 161 IPR008942 -
Ssu6g0699 582 Gene3D ANTH domain 176 326 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0699 Ssu-Chr6 10937992 10943760 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0699 K20044 - gmx:100818165 936.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0699 6 10937992 10943760 Ssu6g0699 6 10937992 10943760 ECH
Ssu6g0699 6 10937992 10943760 Ssu1g1491 1 34867205 34872786 PCT