Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1491 atggGAACGTTTCAGAGCTTCAGAAAAGCCTATGGAGCTCTCAAGGACTCCACCAAGGTTGGCCTCGCCAAAGTCAATAGCGAATACAAGGAGTTGGATATTGCAATTGTAAAGGCTACCAATCACGTGGAATACCCTCCCAAGGAACGTCATGTTCGAAAAATATTCTATGCAACATCAGCGCATCAACCACGGGCAGATGTGGCATACTGCATTCACAAACTTTCCAAGAGACTGTGCAAGACGCGAAGTTGGATAGTTGCTATAAAGATATTGATAGTCATTCATAGGACTTTGAGAGAGGGTGATCCTACCTTTAGAGAAGAGATTCTAAACTACGCACGCAGGGGATACATTCTCCAAATATCCAATTTCAAAGATGACTCAACCCCtcaagCTTGGGATTGTTCTGCATGGGTTCGAACCTATGCACTATTTTTAGAAGAAAGACTTGAATGCTTTAGAGTCCTTAAATATGACATAGAATCTGAGCGTTTAACAAAATCATCACCAACTGCAACTAAAGCACATACCAGAACTCGGTCGCTGGCTAGTGATGATCTGTTGGAGCAGTTACCTGCATTGCAGCAACTTCTATACCGCCTTATTGGTTGTCAGCCTGAAGGATGTGCTTATGGGAATTATCTAGTGCAGTATGCGTTGGCCCTGGTTTTGAAAGAGAGTTTCAAAATATACTGCGCACTCAATGATGGAATTATCAATCTTGTGGACATGTTCTTTGATATGTCAAGACATGACGCAGTGAAGGCtctaaacatttataaaagaGCTGGCCAACAGGCTGAGCATCTTGCTGACTTCTATGAATACTGCAAAGGCTTGGACCTTGCTAGGAATTTCCAATTTCCAACACTGAGACAGCCGCCTCCCTCCTTCCTTGCAACTATGGAAGATTACATTAAAGAAGCACCTCAGACAGGCTATGTTAACAAGAGACTGGAGTATCTGGAAAATGATGAATCGCCTAAAGAAGAATCAGAACCCAATGAACCTGAAGAGCCTCAAGAAAATGAGGAACAAGCTGAGGAAGTCAGTGAGGAAGAGCCAGAAGCAGAGGAAGAAGCACAACCTACGGAAGAAGAGGCTGAGCCTCCTCCTTTGATATCAACTGATGATGCTACAGATGATTTGCTGGGTCTTAATGAAATAAATCCAAAGGCTATGGAACTGGAGGAAAACAATGCTATGGCTCTTGCAATTATACCACCTGGTGGAAATAATCCAAACAATCTTGCTTTGAGTAACATTGACGGGACTACTGGTTGGGAACTTGCACTGGTTACAACACCAAGTAACCATACCAGTCAAGCATCAGATCGCAAAATGGCTGGTGGTTTTGACAAGCTATTACTGGACAGTCTGTATGAAGATGAAAATTCCAGGAGACAACTTCAACTCCAAAATGCAGGTTATGGACATGGGGGAACAATGGCTATACAGAACCCATTTGATCATTATAACCAGCATGATCCATTTGCAATGTCCAACAACATAGCACCTCCACCCAATGTGCAAATGGCACTAATGGCTCAACAACAGCAGCAGCAACAAATGATGTTCCAGCAGCAGCAAATGATGTACCAACCACAACAACAGCACAACATGATGATGGTCCCTCACCAGCAGCAACCACATAACCAATACCCTCAACAGATGCAGGCTTCAGGTTCTCATAATCCATTTGGAGATCCCTTACCCGTACAAAACTATCAACATAGTTCCATGCCCCAACAGGGAAATCACAATTTAATGTAG 1776 0.4274 MGTFQSFRKAYGALKDSTKVGLAKVNSEYKELDIAIVKATNHVEYPPKERHVRKIFYATSAHQPRADVAYCIHKLSKRLCKTRSWIVAIKILIVIHRTLREGDPTFREEILNYARRGYILQISNFKDDSTPQAWDCSAWVRTYALFLEERLECFRVLKYDIESERLTKSSPTATKAHTRTRSLASDDLLEQLPALQQLLYRLIGCQPEGCAYGNYLVQYALALVLKESFKIYCALNDGIINLVDMFFDMSRHDAVKALNIYKRAGQQAEHLADFYEYCKGLDLARNFQFPTLRQPPPSFLATMEDYIKEAPQTGYVNKRLEYLENDESPKEESEPNEPEEPQENEEQAEEVSEEEPEAEEEAQPTEEEAEPPPLISTDDATDDLLGLNEINPKAMELEENNAMALAIIPPGGNNPNNLALSNIDGTTGWELALVTTPSNHTSQASDRKMAGGFDKLLLDSLYEDENSRRQLQLQNAGYGHGGTMAIQNPFDHYNQHDPFAMSNNIAPPPNVQMALMAQQQQQQQMMFQQQQMMYQPQQQHNMMMVPHQQQPHNQYPQQMQASGSHNPFGDPLPVQNYQHSSMPQQGNHNLM 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1491 591 MobiDBLite consensus disorder prediction 324 381 - -
Ssu1g1491 591 PANTHER CLATHRIN ASSEMBLY PLANT-LIKE PROTEIN 1 578 - -
Ssu1g1491 591 Gene3D - 5 161 IPR008942 -
Ssu1g1491 591 Gene3D ANTH domain 173 326 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Ssu1g1491 591 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Ssu1g1491 591 PANTHER CLATHRIN ASSEMBLY PROTEIN 1 578 IPR045192 GO:0048268|GO:0072583
Ssu1g1491 591 SUPERFAMILY ENTH/VHS domain 31 162 IPR008942 -
Ssu1g1491 591 MobiDBLite consensus disorder prediction 550 591 - -
Ssu1g1491 591 SMART enth_2 30 161 IPR013809 -
Ssu1g1491 591 SUPERFAMILY GAT-like domain 178 309 - -
Ssu1g1491 591 MobiDBLite consensus disorder prediction 327 367 - -
Ssu1g1491 591 CDD ANTH_N 32 154 - -
Ssu1g1491 591 Pfam ANTH domain 31 309 IPR011417 GO:0005543
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1491 Ssu-Chr1 34867205 34872786 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1491 K20044 - gmx:100783084 904.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1491 1 34867205 34872786 Ssu1g1491 1 34867205 34872786 ECH
Ssu6g0699 6 10937992 10943760 Ssu1g1491 1 34867205 34872786 PCT