Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0694 ATGGCCACTCTGGACCCAATCCAAAACGGCACCTCGAACCTCCTCTCATCGGATAATCCCGCCGCCGCGGAGCCTCCCTCCACCACCGCCGCCGACCCCGCTCCCGAGGCGGCCGCCGAGAAGCGGTGGCCTGGGTGGCCCGGCCACTGCGTGTTCCGCCTCATCGTGCCGGTGCTCAAAGTCGGCAGCATCATCGGGCGCAAGGGGGAGCTCATCAAGAAGACCTGTGAGGAAACGAGAGCTCGCATTCGCGTTCTCGACGGCGCCGTCGGCACCACCGATCGAATCgtaCTCATATCAGGGAAGGAAGAGCCAGAGGCACCTCTATCTCCTGCAATGGATGCTGTAATAAGGGTTTTTAAACGTGTCTCAGGGTTATCTGAAATTGATGGTGACAATAAAGCATCAGGGGTTGCATTTTGTTCCATCCGTTTATTGGTGGCCTCAACTCAGGCTATCAATTTGATTGGAAAGCAGGGCTCATTAATTAAATCTATACAGGAAAATACTGGTGCTTCTGTTAGAGTACTGTCTGGAGATGAGGTTCCCTTCTATGCTGCTGCTGATGAGAGGATTGTGGAACTGCAGGGAGAAGCCTTGAAGGTCCTTAAGGCTCTGGAAGCAGTAGTTGGGCACCTGAGGAAGTTTTTGGTTGATCATAGTGTTCTTCCCTTATTTGAGAAAACTTACAATGCTACAATCTCCCAAGAGCGCCAGACAGATAGCTGGGTTGACAGACCATCACTGCATAGTGCTTCACAACCTAGTATTGTAACCGACATTCCTCTTTCAACAAAAAGGGATTCTCTCTTTGCTGACCGTGAAAGTCAATTGGATTCATTGCTCCCTCCCTCCACAATGTCAATATATGGGCAAGATTCTTCACTTTCTGGTCTTCGTACTTCAGCTCTCGGTCGACCCAGTGCTCCTCCTATTGTTACCACGGTAATTCAAACAATGCAAATCCCACTGTCCTATGCAGAGGACATCATTGGTATACAAGGGACTAATATTGATTACATTCGCCGTACTAGTGGAGCCATATTGACCGTGCAGGAGAGCCGGGTGCCTGATGAAATCATTGTGGAAATAAAAGGCACCTCATCTCAGGTTCAAACGGCACAACAGTTGATTCAGGAAGTTATAAGCAATCACAAAGAACCAGTTGCTAGTAATTACAGCAGGTTAGATACGGGTGTGAGGTCTTCTTACCCTCAATTGGGCAGTTCATCGTATTCCTCATCTTCCTTGCCCTCGCAACCCTACAGCGGGTATGGATCTTCTGGTCTAGGAGGCTATAGTACTTTCAGACTTTGA 1317 0.4935 MATLDPIQNGTSNLLSSDNPAAAEPPSTTAADPAPEAAAEKRWPGWPGHCVFRLIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDGAVGTTDRIVLISGKEEPEAPLSPAMDAVIRVFKRVSGLSEIDGDNKASGVAFCSIRLLVASTQAINLIGKQGSLIKSIQENTGASVRVLSGDEVPFYAAADERIVELQGEALKVLKALEAVVGHLRKFLVDHSVLPLFEKTYNATISQERQTDSWVDRPSLHSASQPSIVTDIPLSTKRDSLFADRESQLDSLLPPSTMSIYGQDSSLSGLRTSALGRPSAPPIVTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAILTVQESRVPDEIIVEIKGTSSQVQTAQQLIQEVISNHKEPVASNYSRLDTGVRSSYPQLGSSSYSSSSLPSQPYSGYGSSGLGGYSTFRL 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0694 438 Pfam KH domain 143 209 IPR004088 GO:0003723
Ssu6g0694 438 Pfam KH domain 318 380 IPR004088 GO:0003723
Ssu6g0694 438 Pfam KH domain 52 104 IPR004088 GO:0003723
Ssu6g0694 438 SMART kh_6 48 121 IPR004087 GO:0003676
Ssu6g0694 438 SMART kh_6 139 214 IPR004087 GO:0003676
Ssu6g0694 438 SMART kh_6 314 383 IPR004087 GO:0003676
Ssu6g0694 438 MobiDBLite consensus disorder prediction 1 42 - -
Ssu6g0694 438 CDD PCBP_like_KH 51 120 - -
Ssu6g0694 438 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 310 384 IPR036612 GO:0003723
Ssu6g0694 438 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER 37 427 - -
Ssu6g0694 438 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 43 104 IPR036612 GO:0003723
Ssu6g0694 438 CDD KH-I 317 379 - -
Ssu6g0694 438 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 37 427 - -
Ssu6g0694 438 CDD PCBP_like_KH 142 210 - -
Ssu6g0694 438 MobiDBLite consensus disorder prediction 1 24 - -
Ssu6g0694 438 Gene3D K Homology domain, type 1 313 388 IPR036612 GO:0003723
Ssu6g0694 438 ProSiteProfiles Type-1 KH domain profile. 140 209 - -
Ssu6g0694 438 ProSiteProfiles Type-1 KH domain profile. 315 378 - -
Ssu6g0694 438 ProSiteProfiles Type-1 KH domain profile. 49 116 - -
Ssu6g0694 438 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 136 221 IPR036612 GO:0003723
Ssu6g0694 438 Gene3D - 49 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0694 Ssu-Chr6 10862195 10866877 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0694 K21444 - gmx:100802089 698.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0694 6 10862195 10866877 Ssu6g0694 6 10862195 10866877 ECH
Ssu6g0694 6 10862195 10866877 Ssu1g1497 1 35011018 35018172 PCT