Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1497 atggCCACCGCGGAACCACTCCAGAACGGCACCGCGGGGAAGGCACTCCCGCCGGACAATGCATCCGCCGCACAACCGCCCATCGAGGCGGAAGCTGACACCACCGCCGCGTCCACTCCGCCGGAGAAGAGATGGCCGGGGTGGCCCGGGGACTGCGTGTTCCGACTCATCGTGCCGGTGGGGAAGGTGGGAAGCATCATTGGGCGCAGGGGAGAGCTGATAAAGAAGATGTGCGAAGAAACTCGATCTCGTATTCGCGTTCTCGACGCTCCTTTCGGCACTCCTGATCGAATTgTACTTGTATCGGGGAAGGAAGAGCCAGAGGCAGCTCTCTCTCCTGCAATGGATGCTGTAATAAGGGTATTCAAGCGTGTCTCTGGATTATCTGAAACTGATGCTGAGAATAAAGAATCTGCTGCTGGTCTTGCATTTTGTTCCATCCGTTTATTGGTGGCATCAACACAGGCTATCAATTTAATTGGAAAACAAGGCTCATTAATCAAATCTATTCAGGAGAATACCAGTGCTTCTGTTAGAGTACTGTCAGGAGATGAGGtgcaattttataatattgcgGATGAGAGGATTGTGGAAATGCAAGGAGAAGCCTTCAAGGTCCTTAAAGCTCTGGAAGCAGTAGTTGGCCATCTGAGGAAATTTTTGGTTGATCATAGTGTTCTTCCCCTATTTGAGAAAGCTTATAATGCGCCAATCTCACAAGACCGTCAGGCAGAGACCTGGTCTGACAAGTCATTGCTGCATACTACTTCACAAACTAGCATTTTTGCCGATATTCCTCTTTCAACAAAAAGGGATTCCGTTGTAGCTGACCGTGAAAGTCAATTGGACTCATTACTCCCTTCCTCCACTATGTCTCTCTATGGGCAAGATTCTTCACTTTCTGGTGTTCGTTCTTCAGCTCTTGGCCGTGTTGGTGCTCCTATTGTTACTACGGTAATACAAACAATGCAAATACCACTATCCTATGCGGAGGACATCATTGGTATTCAAGGGGCTAATATTGATTACATTCGCCGCACTAGTGGGGCCATATTGACTGTGCAGGAGAGCAGGGTGCCTGATGAAATCATTGTGGAAATAAAAGGCACCTCAGCTCAGGTTCAAACAGCACAACAATTGATTCAGGATGTTATAAGCAATCACAAAGAACCTGTCAGTAGCAGTTACGGCAGGCTAGATGCAGGTCCAAGGTCTTCATACTCTCAGTTGGGCACTACATCACGTCTCTCATCTTCCTTGTCCTCACAACCATACACGGGTTATGGAGCTTCTGGTTTAGGAGACTACAGTACTTTCaggctttaa 1326 0.4721 MATAEPLQNGTAGKALPPDNASAAQPPIEAEADTTAASTPPEKRWPGWPGDCVFRLIVPVGKVGSIIGRRGELIKKMCEETRSRIRVLDAPFGTPDRIVLVSGKEEPEAALSPAMDAVIRVFKRVSGLSETDAENKESAAGLAFCSIRLLVASTQAINLIGKQGSLIKSIQENTSASVRVLSGDEVQFYNIADERIVEMQGEAFKVLKALEAVVGHLRKFLVDHSVLPLFEKAYNAPISQDRQAETWSDKSLLHTTSQTSIFADIPLSTKRDSVVADRESQLDSLLPSSTMSLYGQDSSLSGVRSSALGRVGAPIVTTVIQTMQIPLSYAEDIIGIQGANIDYIRRTSGAILTVQESRVPDEIIVEIKGTSAQVQTAQQLIQDVISNHKEPVSSSYGRLDAGPRSSYSQLGTTSRLSSSLSSQPYTGYGASGLGDYSTFRL 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1497 441 CDD KH-I 320 382 - -
Ssu1g1497 441 ProSiteProfiles Type-1 KH domain profile. 318 381 - -
Ssu1g1497 441 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 44 106 IPR036612 GO:0003723
Ssu1g1497 441 Gene3D - 51 221 - -
Ssu1g1497 441 MobiDBLite consensus disorder prediction 391 423 - -
Ssu1g1497 441 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER 40 430 - -
Ssu1g1497 441 MobiDBLite consensus disorder prediction 1 45 - -
Ssu1g1497 441 CDD PCBP_like_KH 146 214 - -
Ssu1g1497 441 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 314 387 IPR036612 GO:0003723
Ssu1g1497 441 Pfam KH domain 147 213 IPR004088 GO:0003723
Ssu1g1497 441 Pfam KH domain 54 107 IPR004088 GO:0003723
Ssu1g1497 441 Pfam KH domain 321 383 IPR004088 GO:0003723
Ssu1g1497 441 Gene3D K Homology domain, type 1 316 391 IPR036612 GO:0003723
Ssu1g1497 441 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 142 224 IPR036612 GO:0003723
Ssu1g1497 441 CDD PCBP_like_KH 53 122 - -
Ssu1g1497 441 ProSiteProfiles Type-1 KH domain profile. 51 118 - -
Ssu1g1497 441 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 40 430 - -
Ssu1g1497 441 SMART kh_6 143 218 IPR004087 GO:0003676
Ssu1g1497 441 SMART kh_6 50 123 IPR004087 GO:0003676
Ssu1g1497 441 SMART kh_6 317 386 IPR004087 GO:0003676
Ssu1g1497 441 ProSiteProfiles Type-1 KH domain profile. 144 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1497 Ssu-Chr1 35011018 35018172 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1497 K21444 - gmx:100815466 757.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1497 1 35011018 35018172 Ssu1g1497 1 35011018 35018172 ECH
Ssu6g0694 6 10862195 10866877 Ssu1g1497 1 35011018 35018172 PCT