Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0689 ATGCGCTCAGGAGTTTGTGCATTACAGCAGACCCTCACAGCTGAGGCTGCTTCAGTGTTGAAGCACTCTCTGGGGTTGGCTCGGAGGAGGGGCCATGCACAGGTCACTCCTCTGCATGTGGCTGCCACTTTGCTCAGCCTAAGAGGCAGTTCTTTGAGAAGGGCTTGTCTTAAGTCTCAGCCTCACCAAACTTCTCATCCTCTTCAATGCAGGGCTCTTGAGTTGTGCTTCAATGTGGCTCTCAACAGGCTTCCCACAACACCTGCTCCTTTGATCCACACTCAGCCTTCTCTTTCCAATGCTCTCATTGCTGCACTGAAGAGAGCTCAGGCTCACCAGAGAAGAGGGTGCATAgagcaacagcaacaacagcCTCTTCTCACCATCAAGGTTGAGATGGAACAGCTCATCATATCCATTCTTGATGACCCTAGTGTTAGCAGGGTCATGAGAGAGGCTGGTTTCTCCAGCGCTGCTGTTAAGAACAACATAGAGGACTCCTCACCCCATTCTGTTTTCCAGTCTTACAATAGTTCTGGGGGTGTGTTTTCTTCTCCTTGTTCACCTTCTGCCAGTGAGAGCCATAGGGAAATAACCACCAACCCTACCAATTTCAGGCAGACTCATCATTTTTTAGCTTCTTATGCTTCTGAGTTCCACCCTTCACTTGTCTTTTCTCCACCAAAGAATGCACCAGTGTGTTCCATCACTGGTGCAGCTTCTTCTAGCAAGGATGATATCAGGCTTGTTCTGGATATCCtcttgaggaagaagaaaaagaacactGTGATTGTTGGTGACTCAGTGTCATTAACTGAAGGCCTTGTGGGAGAGCTAATGGGAAAACTAGAAAGGTCAGAAGTGCCTGATGAGTTGAAGTCAACCCATTTTATCAAATTCCAATTTTCACCTGTTTCTTTGAGTAACATGAAGAGAGATGAAGTTGAAATGAAACTATTGGAACTGAAAAGGAAGGTGGATTCCATTGCATCAGGAGGAGGGAGTGGCATTTTTTATATTGGAGACCTGAAGTGGACAGTGGAGGAGGCAACTTTCAGTGAGAAAGAGGAAGGGTCCCCAGATGAAGAAGTTTCTGGTTACAACCCAGTTGATCATTTAGTTTCAGAAATAGGAAAGTTATTCTGTGACTGTGGAACCTCAAATAATGCTAAGGTGTGGCTCATGGCCACTGCTAGTTATCAAACATACATGAGGTGCCAAATGAGGCAACCCCCTCTTGAGAAGCAGTGGGCTCTTCAGGCTGTTCCTGTTCCATCAGGTGGACTTGGCTTGAGTCTTCATGCTCCCAGTGTCCTAGATTCAAAGACGACCATCTCCCAGAACCAATTTCATGTGCCAGAAACAAAGCCCTTTGGTAACATGGAGCAGCAGGATACGCTCAATTGTTGTGAAGAATGTGCCTCCAATTATGAAAAAGAAGCTCAATTTCTCAGACCAAACCACAAGAAAATTTTGCCTTTCTGGCTTCAGTCTCATAGCACAGAAGACCATAAGAAGGATGAATTAGTTcagttgaaaagaaaatggaatagaCTATGCCACTGTCTCCACCAAAGCAAACAGCCTCAGAACCAATGGAACTGGAACAACAGTTATGATTCACCAAGCTCTATATCCTTTGCCAACAGTTCCACATATGGCTCCAGCTCCAAACTTGTCCCTCGATTCCGGCGCCAACAATCATGCATCACTGAGTTCAATTTCGGCAACAAAAGGGAAGCAACAGAGCCAGTCTTGGATTCCCTTGAGAGCATGGAAGGTAAAGAAGTAAAGACTACTCTTGCTCTAGGAAATGGTGGTTCAGGTGAGACGGTGGGGGATATAACTGATACAACACTGCAACGAGCTCATATTTGTAAACTATTGCAGGAGAATGTGCCATGGCAGTCTGAGACTGTTCCTTCAATAGCAGAAGCCTTGATTGATTGCAAATCAGCAAAGCAAAGTAACAACATTACTTGGTTACTTGTGCAAGGCAATGACACCATTGGGAAAAGAAGGTTGGCACTTGCAGTTGCAGAATCAGTTTTTGGCGCAACTGATGTGCTCCTTCACTTTGACATGCTAAAGAGAGAGACCTCAATAGCCCCATTTTCTGAAATGCTGGCAGGAGCATTGAAAACCCACCAACAACTTGTGATGCTAATAGAAAATGTTGACTTTACTGATGCCCAGTTCAAGAAATTCCTCTCCGATGGATTTGAAACAGGAAAGTTTGGAAATTCCACAGAAGAGAACTCAAGCCAAGTAATATTCATATTGACAAGTGGTGGATCCACTAGCATTGAGGAGAAGAATGAAGAGTTGGTTATGAGGTTGTTGTGGCAGGTCAGTGAAACCAAGCCTAACTTAGAGACACCGACACCAACTGTCGCAACCGGGATCGCGGCGCCTTGTTTAGGCCATAAGAGAAGAGCTGAACTGGATTTATTTTCTAACATCAAGAGTTTTCAAGGGAGCAAGAAGAAAGAGTTTTCAAGACAAACAAGCTTCAACACTCTTGATCTGAACATGAAAGCTGATGAAGAGGATAAAGCAGGAGAAAGTAGCCCCATTTCAAGTGATTTGACTAGAGAAACTATTGCTGATCCACTGAAGCCAAATGGGTTTTTTGACTCAATTAAGAACCGGTTTGAGTTCAACACAAGTCCAGTTAGGGACAGGGAGATGGCAGAGTTGTTTTTGTGTAAGATCAAAGGGTCTTTTGAGGAGGTTAATGGCAAGCAATGTTTGGAGAACTTAAGTGTAGATGAGAGGGTGATTGAGGATGTGCGTGTCGGGTGTGGTTTTTTCACCAACAGCTTGTTTGAGAAATGGCTGAAAGACGTTTTTCAAAGCAGCTTACAGACAGTTAACTTTGGAGGGAAGGAGGGTATACTTTTTAGACTTTCTTGGGGTGGTAAAGGAGATAGAAAATTGGATAGTGGGTTCATGAGTACTTCTCTGCCCAAGTGTATCCAAGTTAACTACTTCATAGAGTGA 3003 0.4352 MRSGVCALQQTLTAEAASVLKHSLGLARRRGHAQVTPLHVAATLLSLRGSSLRRACLKSQPHQTSHPLQCRALELCFNVALNRLPTTPAPLIHTQPSLSNALIAALKRAQAHQRRGCIEQQQQQPLLTIKVEMEQLIISILDDPSVSRVMREAGFSSAAVKNNIEDSSPHSVFQSYNSSGGVFSSPCSPSASESHREITTNPTNFRQTHHFLASYASEFHPSLVFSPPKNAPVCSITGAASSSKDDIRLVLDILLRKKKKNTVIVGDSVSLTEGLVGELMGKLERSEVPDELKSTHFIKFQFSPVSLSNMKRDEVEMKLLELKRKVDSIASGGGSGIFYIGDLKWTVEEATFSEKEEGSPDEEVSGYNPVDHLVSEIGKLFCDCGTSNNAKVWLMATASYQTYMRCQMRQPPLEKQWALQAVPVPSGGLGLSLHAPSVLDSKTTISQNQFHVPETKPFGNMEQQDTLNCCEECASNYEKEAQFLRPNHKKILPFWLQSHSTEDHKKDELVQLKRKWNRLCHCLHQSKQPQNQWNWNNSYDSPSSISFANSSTYGSSSKLVPRFRRQQSCITEFNFGNKREATEPVLDSLESMEGKEVKTTLALGNGGSGETVGDITDTTLQRAHICKLLQENVPWQSETVPSIAEALIDCKSAKQSNNITWLLVQGNDTIGKRRLALAVAESVFGATDVLLHFDMLKRETSIAPFSEMLAGALKTHQQLVMLIENVDFTDAQFKKFLSDGFETGKFGNSTEENSSQVIFILTSGGSTSIEEKNEELVMRLLWQVSETKPNLETPTPTVATGIAAPCLGHKRRAELDLFSNIKSFQGSKKKEFSRQTSFNTLDLNMKADEEDKAGESSPISSDLTRETIADPLKPNGFFDSIKNRFEFNTSPVRDREMAELFLCKIKGSFEEVNGKQCLENLSVDERVIEDVRVGCGFFTNSLFEKWLKDVFQSSLQTVNFGGKEGILFRLSWGGKGDRKLDSGFMSTSLPKCIQVNYFIE 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0689 1000 MobiDBLite consensus disorder prediction 843 862 - -
Ssu6g0689 1000 ProSiteProfiles Clp repeat (R) domain profile. 8 170 IPR004176 -
Ssu6g0689 1000 Gene3D - 608 793 IPR027417 -
Ssu6g0689 1000 SUPERFAMILY Double Clp-N motif 12 165 IPR036628 -
Ssu6g0689 1000 Gene3D - 9 168 IPR036628 -
Ssu6g0689 1000 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 964 - -
Ssu6g0689 1000 PANTHER PROTEIN SMAX1-LIKE 5 1 964 - -
Ssu6g0689 1000 Pfam Clp amino terminal domain, pathogenicity island component 26 53 IPR004176 -
Ssu6g0689 1000 Pfam Clp amino terminal domain, pathogenicity island component 132 166 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0689 Ssu-Chr6 10779078 10782867 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0689 - - gmx:100814376 1726.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0689 6 10779078 10782867 Ssu6g0689 6 10779078 10782867 ECH
Ssu6g0689 6 10779078 10782867 Ssu1g1502 1 35233889 35238188 PCT