Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1502 ATGCGCTCAGGAGCTTGTACATTGCAACAGACCCTCACAGCGGAGGCTGCTTCAGTGTTGAAGCACTCTCTTGGGTTGGCACGCAGAAGGGGCCATGCACAGGTCACCCCTCTGCATGTGGCTGCAACTTTGCTGAGCCTAAGAGCCAGTTCCTTGAGAAAGGCTTGTCTCAAGTCTCAGCCACACCAAACTTCACACCCTCTTCAGTGCAGAGCCCTTGAGCTTTGCTTCAATGTGGCCCTCAACAGGCTCCCGACAACACCTGGTCCTTTGCTCCACACACAGCCTTCTCTCTCCAATGCCCTCATTGCTGCACTCAAGAGAGCACAGGCTCATCAGAGAAGAGGGTGCATtgagcagcagcagcagcagccaCTTCTCACCATCAAGGTGGAGCTTGAACAGCTCATTATATCCATCCTTGATGACCCTTCTGTTAGTAGGGTTATGAGAGAGGCCGGTTTTTCTAGCACTGCTGTGAAGAGCAACATAGAGGACACTGCTACTGCCCCTTCTGTTTTCCAGTGTTACAACAGTTCTGGTGGTGTTTTCTCCTCTCCTTGTTCACCATCTCCCAGTGAGAACCAGAGAGAAGGGATCAACACTGCCGGGGCTTTCAGGCAGAACCATTTCCTGGCTGCTTACAGTCATGAGTTTAGTCCACTTCTGTTTTCTCCACAGAAGAAGGCCTCAGTGTTTCCCATCACTGAGTCACCACCCTCTTCCAAGGAGGATATCAAGGTGGTTCTTGATGTCCtcttgaggaagaagaagaggaacacTGTCATAGTTGGTGACTCAGTGGCACTAACTGAAGGCCTTGTGGGAGAGCTGATGGGGAAGTTGGAAAGAGGAGAGGTGCCTGATGAGTTGAAGTCAACACACTTCATCAAGTTTCAGCTTGCACCAGTCTCTTTGAGGTTCATGAAAAGGGATGAAGTGGAGATGAGTCTCTCAGCACTGAAAAGGAAGGTGGATTCTGTTGCATCAGGAGTTGGAGGAGCCATTTTCTATGTTGGAGACCTGAAGTGGACAGTGGAAGCAACAACTTCAAGTGAAAAGGAGGAAAGGGAAGTTTGTGGTTATAACCCAGTTGATCATGTAGTTGCTGAAATAGGGAAGTTATTTTGTGACTCCAAAACTAAGGTGTGGCTTGTGGCCACAGCAAGTTATCAAACATACATGAGGTGTCAAATGAGGCAACCCCCTCTTGAGACTCAATGGGCTCTTCAAGCTGTTTCTGTTCCATCAGGTGGACTTGGCTTGAGTCTCCATGCTTCCAGTGTTCACGATTCAAAGATGACAATCTCCCAGAACCCATCTCATATGCTGGAAACAAAGCTCTTCAGTAACGACAAGGAGGAACAGGATAAACTCAACTGTTGTGAAGAATGTGCCTCCAACTATGAAAAAGAAGCTCAGTTGTTCAAACCAGGCCAGAAGAAACTGTTGCCTTCCTGGCTTCAGTCTCATACCACCGAAGCCCATCAAAAGGATGAGTTAACCCAGTTGAAAAGGAAATGGAACAGACTATGTCACTGTCTCCACCAGAGCAAGCAGCCTCAGAACCATTGGAGCAACAGTTTACATGGCAATCACAGTTCAAATGGCAAGATCTACCCTTACAATTCATCATACCCCTGGTGGCCAAACCAAGGCAGTGTCTTCACAGATTCAAGTTGCATATCTTTCGCTGATTCAGCTGCCAAACCCGCTTATAGCTCCAACATTGTCCCTCGGTTCCGGCGCCAGCAATCATGCACCATTGAGTTCAATTTCAGCGATGTGACTCAGGAAAAGCCATCCACAGCCTTGGATTCTCTCGAGGGCATGGAAGGTAATAACAACGAAGTAAAGGTTACTCTTGCTCTTGGAAATTCAACATTCGGTGGTTCAGGGCAAACGGTGGAAAATATCATAACTACTGATAGAACACTGCGACGAGCTCATGTTTGTAAACTGTTGCAGGAGAATGTGCCATGGCAATCTGAGACAGTTCCTGCCATAGCCGAGGCCTTGGTTGATTCCAAATCTGCAAAGCAAAGTGCCACCACTTGGTTGTTATTGCAAGGAACTGACTCTACTGGGAAAACAAGGTTGGCACGTGCGATTGCAGAATCGGTGTTTGGCTCAGTTGATGTGCTCCTTCACTTGGACATGCTGAAAAACAAGGAGAATTCAGCAACCCCATTTGCTGAAATGGTGGCCGGAGCATTGAAAAGCCACGAAAAGCTTGTGATTCTggtagaaagtttggattttgcCGATGCCCAGTTCAGGAAGTTTCTTGCAGATGGGTTTGAAACTGGAGAGTTTGGAGGGTTAAGTAGGAGTGAGGAGAGTTCAGGCCAAGCAATATTCATATTGACCAATGGGGACACTAGGAGCAATGAAGAGCAGAACAAGAAGGAGTCAGTGATGAAGTTGGTGTTGCAGATAAGTGAAACCAAGCCTACTTTGGAGTCTTCATCACCTTGTTTGGGTCACAAGAGAAGGGCTGAACTGGATTTGTTTGCCAAGGTTAAGAATCCGAGGATTGAGGAGAAGGAGGAGGCTAGGAAAGGGTTTTCAAGGCATTCAAGCTTTAACAATCTTGACCTGAACATGAAAGCTGATGAAGAGGACGATGGGGAAGAGAAAACAGGTGGAAGTAGTCCAATTTCAAGTGATTTGACTAGGGAAACTCTGGCAGATCCATTGAGCTGGAATGGGGCACTTGACTCAATTGAGAACAGGTTTGAGTTGAATGATTGTCCGGAGAGGGACAGGGAGGTGGCAGATATGTTTCTGTCAAAGATCAAAGAGTCTTTTGAGGAGGTTTACGGGGTGGTGAAGTTTACTGTAGAGGAGAGGGTGATAGAGGAAATTGGTGTGGGGTGTGGTAATTTTACTAACAGCATGTATGAGAAATGGCTGAAAGACATTTTTCAAAGCAGTTTACAGACAGTTAACTTTGGTGGGAAGGAGGGTATAGATTTTACACTTTGTTGGGGTGGTAAAGGAGATAGGAAATCGGATAGTGGGTTCATGGGTTCATGTTTGCCCAAGAATGTCCAAGTTAACTACTTCATGGATTGA 3078 0.4574 MRSGACTLQQTLTAEAASVLKHSLGLARRRGHAQVTPLHVAATLLSLRASSLRKACLKSQPHQTSHPLQCRALELCFNVALNRLPTTPGPLLHTQPSLSNALIAALKRAQAHQRRGCIEQQQQQPLLTIKVELEQLIISILDDPSVSRVMREAGFSSTAVKSNIEDTATAPSVFQCYNSSGGVFSSPCSPSPSENQREGINTAGAFRQNHFLAAYSHEFSPLLFSPQKKASVFPITESPPSSKEDIKVVLDVLLRKKKRNTVIVGDSVALTEGLVGELMGKLERGEVPDELKSTHFIKFQLAPVSLRFMKRDEVEMSLSALKRKVDSVASGVGGAIFYVGDLKWTVEATTSSEKEEREVCGYNPVDHVVAEIGKLFCDSKTKVWLVATASYQTYMRCQMRQPPLETQWALQAVSVPSGGLGLSLHASSVHDSKMTISQNPSHMLETKLFSNDKEEQDKLNCCEECASNYEKEAQLFKPGQKKLLPSWLQSHTTEAHQKDELTQLKRKWNRLCHCLHQSKQPQNHWSNSLHGNHSSNGKIYPYNSSYPWWPNQGSVFTDSSCISFADSAAKPAYSSNIVPRFRRQQSCTIEFNFSDVTQEKPSTALDSLEGMEGNNNEVKVTLALGNSTFGGSGQTVENIITTDRTLRRAHVCKLLQENVPWQSETVPAIAEALVDSKSAKQSATTWLLLQGTDSTGKTRLARAIAESVFGSVDVLLHLDMLKNKENSATPFAEMVAGALKSHEKLVILVESLDFADAQFRKFLADGFETGEFGGLSRSEESSGQAIFILTNGDTRSNEEQNKKESVMKLVLQISETKPTLESSSPCLGHKRRAELDLFAKVKNPRIEEKEEARKGFSRHSSFNNLDLNMKADEEDDGEEKTGGSSPISSDLTRETLADPLSWNGALDSIENRFELNDCPERDREVADMFLSKIKESFEEVYGVVKFTVEERVIEEIGVGCGNFTNSMYEKWLKDIFQSSLQTVNFGGKEGIDFTLCWGGKGDRKSDSGFMGSCLPKNVQVNYFMD 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1502 1025 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1000 - -
Ssu1g1502 1025 Pfam Clp amino terminal domain, pathogenicity island component 26 46 IPR004176 -
Ssu1g1502 1025 Pfam Clp amino terminal domain, pathogenicity island component 131 166 IPR004176 -
Ssu1g1502 1025 PANTHER PROTEIN SMAX1-LIKE 5 1 1000 - -
Ssu1g1502 1025 Gene3D - 9 169 IPR036628 -
Ssu1g1502 1025 Gene3D - 632 850 IPR027417 -
Ssu1g1502 1025 Coils Coil 1024 1025 - -
Ssu1g1502 1025 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 655 790 IPR027417 -
Ssu1g1502 1025 SUPERFAMILY Double Clp-N motif 12 165 IPR036628 -
Ssu1g1502 1025 ProSiteProfiles Clp repeat (R) domain profile. 8 172 IPR004176 -
Ssu1g1502 1025 MobiDBLite consensus disorder prediction 864 893 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1502 Ssu-Chr1 35233889 35238188 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1502 - - gmx:102660146 1691.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1502 1 35233889 35238188 Ssu1g1502 1 35233889 35238188 ECH
Ssu6g0689 6 10779078 10782867 Ssu1g1502 1 35233889 35238188 PCT