Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0681 ATGATGTACGAGCAGCAACGATTTCAGCAGCCGGTGATAAAGATGGATATGAGGAAGAAGACGGAGAGAAGCAAAGGCATAGAGGAAGAGAGGCTCGAAATAGTGGACTTGAGTGGCATGTCCTTGGACTCCCTTCCCAACCCCTCTCTTAATTTAGCCACCATTTGCAAGTTGGACCTCTCCAATAACAATCTTCAGAATATACCGGAGTCCTTAACGGCGAGACTGCTGAACATGGTGGTGTTGGATGTGCACTCCAACCAGCTTAGGTCCCTACCCAATTCCATTGGCTGCCTGTCTAAGCTCAAGGTTTTGAATGTCTCCGGCAACCTCATCGAATACCTTCccaaaacaattgaaaattgcAGAAGCTTGGAAGAACTGAATGCGAACTTCAACAAGTTGAGCCAGCTGCCAGACACGATAGGCTTCGAGCTGCTAAACCTGAAGAAGCTATCGGTGAACTCGAACAAGCTGGTGTTCCTCCCTCGGTCGACCTCTCACCTGACGGCTCTGAAGGTCCTGGACGCGCGGCTGAACTGCCTGAGGTCTCTCCCGGAAGACCTCGAGAACCTGATAAACCTGGAGACCCTGAACGTGAGCCAGAACTTCCAGTACCTGGACTCTCTCCCCTACTCCGTGGGCCTCCTCTTGTCCCTCGTCGAACTCGACGTCAGCTACAACAAGATCAGGGCCCTCCCCGACTCCATAGGCTGCCTCAAGAAGCTCCAGAAGCTCAGCGTGGAAGGGAACCCTCTGGCTTCGCCCCCGCCGGACGTGGTGGAGCAGGGACTGCATGCGGTGAAGGAGTACCTGTGCCACAAGATGAACGCCGGCCATCGCAGCCCCACCAAGAAGAAGTCATGGGTGGGGAGGCTGGTCAAGTACGGGACCTTCAACGGACACACCAGAGGTGGGGCCCGCGAGGAACGCGAGGCTTTCATTGTTCCTGATTATAGACCCATTGACGGCCTTGCTTCGCCGCGCTACATGGGCATGTTTTCGCCTCGCCGCCTCTTCTCGCCCCGCAATTACTTCACCAATTGA 1047 0.5387 MMYEQQRFQQPVIKMDMRKKTERSKGIEEERLEIVDLSGMSLDSLPNPSLNLATICKLDLSNNNLQNIPESLTARLLNMVVLDVHSNQLRSLPNSIGCLSKLKVLNVSGNLIEYLPKTIENCRSLEELNANFNKLSQLPDTIGFELLNLKKLSVNSNKLVFLPRSTSHLTALKVLDARLNCLRSLPEDLENLINLETLNVSQNFQYLDSLPYSVGLLLSLVELDVSYNKIRALPDSIGCLKKLQKLSVEGNPLASPPPDVVEQGLHAVKEYLCHKMNAGHRSPTKKKSWVGRLVKYGTFNGHTRGGAREEREAFIVPDYRPIDGLASPRYMGMFSPRRLFSPRNYFTN 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0681 348 Gene3D Ribonuclease Inhibitor 2 140 IPR032675 -
Ssu6g0681 348 Gene3D Ribonuclease Inhibitor 141 274 IPR032675 -
Ssu6g0681 348 ProSiteProfiles Leucine-rich repeat profile. 219 240 IPR001611 GO:0005515
Ssu6g0681 348 SUPERFAMILY L domain-like 32 262 - -
Ssu6g0681 348 SMART LRR_bac_2 146 165 - -
Ssu6g0681 348 SMART LRR_bac_2 99 118 - -
Ssu6g0681 348 SMART LRR_bac_2 122 141 - -
Ssu6g0681 348 SMART LRR_bac_2 76 95 - -
Ssu6g0681 348 SMART LRR_bac_2 217 236 - -
Ssu6g0681 348 SMART LRR_bac_2 169 188 - -
Ssu6g0681 348 SMART LRR_bac_2 52 71 - -
Ssu6g0681 348 SMART LRR_typ_2 217 239 IPR003591 -
Ssu6g0681 348 SMART LRR_typ_2 76 98 IPR003591 -
Ssu6g0681 348 SMART LRR_typ_2 52 75 IPR003591 -
Ssu6g0681 348 SMART LRR_typ_2 123 145 IPR003591 -
Ssu6g0681 348 SMART LRR_typ_2 146 168 IPR003591 -
Ssu6g0681 348 SMART LRR_typ_2 169 192 IPR003591 -
Ssu6g0681 348 SMART LRR_typ_2 240 263 IPR003591 -
Ssu6g0681 348 SMART LRR_typ_2 99 122 IPR003591 -
Ssu6g0681 348 Pfam Leucine rich repeat 57 112 IPR001611 GO:0005515
Ssu6g0681 348 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 6 341 - -
Ssu6g0681 348 PANTHER LEUCINE-RICH REPEAT-CONTAINING 6 341 - -
Ssu6g0681 348 ProSiteProfiles Leucine-rich repeat profile. 54 75 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0681 Ssu-Chr6 10581157 10585467 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0681 50 263 Receptor kinase-like Gene Family AT5G51350 30.942 1.25e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0681 - - gmx:100783239 591.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0681 6 10581157 10585467 Ssu6g0681 6 10581157 10585467 ECH
Ssu6g0681 6 10581157 10585467 Ssu1g1507 1 35484205 35488743 PCT