Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1507 ATGAATATGTACCAATTGCAACAGTTTCACCAACCGATGATGAAGACGGGTACGATGAAGAGGGAGAGAAGCAAAGCCatggagaaagagaaagagaaagagaggctTCAAGTCATGGATTTGAGTGGCATGTCCCTGGAGACTCTTCCCAAACCTTCGCTTGATTTAGCTACCATTTGCAAGTTGGACCTATCTAATAACAATCTCCAGGACATTCCGGAATCCTTAACGGCGAGACTACTAAACTTGGAGGTGTTGGAAGTGCGCTCCAACCAGCTCAAGTCCCTTCCCAATTCCATTGGCTGCCTCTCTAAGCTCAAGGTTTTGAATGTCTCAGGAAACTTCATCGAATTCCTCCCCAAAACCATTGAGAATTGCAGAGCCTTGGAAGAACTGAATGCCAACTTCAACAAGCTGAGCAAGCTGCCAGACACGATAGGGTTTGAGCTCATAAACCTCAAGAAGCTCTCAGTGAACTCCAACAAGCTGGTGTTTCTTCCTAGCTCCACCTCACACCTAACGGCTTTGAAGGTTCTGGATGCACGCTTGAATTGCTTAAGGGCTCTTCCGGAGGACCTTGAGAACCTCATCAACCTTGAGACCCTTAATGTGAGCCAGAACTTCCAGTACCTGGAGACCCTCCCCTACTCAATAGGGCTCCTCTTGTCCCTTGTTGAACTTGACGTTAGCTACAACAAGATCAAGACCTTGCCCGAATCCATTGGCTGCCTCAAGAAGCTCCAGAAGCTAAGTGTGGAAGGGAACCCTCTTACTTGTCCCCCAATGGAGGTGGTGGAGCAGGGACTGCACGTGGTGATGCAGTACATGCATCATAAGATGAACTCAAGCCACCAAGGCCCAACAAAGAAAAGGTGGTGGATGGGGAAGATGGTGAAATGTGGGACCTTCAATAAAGAATCGAGAAGTGGGAAAGGATCAGAACCTGTGGGTTACAACATGCTTAAGCACCAGAATATCAATGGTCTTGCTTCACCAGGCTTCATGGGGATGCTCTCACCTCTTCGCCTCTTCTCACCCCGTCGTACCTTCGGTTGA 1056 0.4716 MNMYQLQQFHQPMMKTGTMKRERSKAMEKEKEKERLQVMDLSGMSLETLPKPSLDLATICKLDLSNNNLQDIPESLTARLLNLEVLEVRSNQLKSLPNSIGCLSKLKVLNVSGNFIEFLPKTIENCRALEELNANFNKLSKLPDTIGFELINLKKLSVNSNKLVFLPSSTSHLTALKVLDARLNCLRALPEDLENLINLETLNVSQNFQYLETLPYSIGLLLSLVELDVSYNKIKTLPESIGCLKKLQKLSVEGNPLTCPPMEVVEQGLHVVMQYMHHKMNSSHQGPTKKRWWMGKMVKCGTFNKESRSGKGSEPVGYNMLKHQNINGLASPGFMGMLSPLRLFSPRRTFG 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1507 351 Coils Coil 19 39 - -
Ssu1g1507 351 SMART LRR_bac_2 80 99 - -
Ssu1g1507 351 SMART LRR_bac_2 56 75 - -
Ssu1g1507 351 SMART LRR_bac_2 126 145 - -
Ssu1g1507 351 SMART LRR_bac_2 221 240 - -
Ssu1g1507 351 SMART LRR_bac_2 103 122 - -
Ssu1g1507 351 SMART LRR_bac_2 196 217 - -
Ssu1g1507 351 SMART LRR_bac_2 150 169 - -
Ssu1g1507 351 SMART LRR_bac_2 173 192 - -
Ssu1g1507 351 SUPERFAMILY L domain-like 35 262 - -
Ssu1g1507 351 Gene3D Ribonuclease Inhibitor 150 278 IPR032675 -
Ssu1g1507 351 Gene3D Ribonuclease Inhibitor 2 146 IPR032675 -
Ssu1g1507 351 Pfam Leucine rich repeat 61 114 IPR001611 GO:0005515
Ssu1g1507 351 SMART LRR_typ_2 56 79 IPR003591 -
Ssu1g1507 351 SMART LRR_typ_2 150 172 IPR003591 -
Ssu1g1507 351 SMART LRR_typ_2 127 149 IPR003591 -
Ssu1g1507 351 SMART LRR_typ_2 80 102 IPR003591 -
Ssu1g1507 351 SMART LRR_typ_2 103 126 IPR003591 -
Ssu1g1507 351 SMART LRR_typ_2 221 244 IPR003591 -
Ssu1g1507 351 SMART LRR_typ_2 173 196 IPR003591 -
Ssu1g1507 351 ProSiteProfiles Leucine-rich repeat profile. 223 244 IPR001611 GO:0005515
Ssu1g1507 351 ProSiteProfiles Leucine-rich repeat profile. 82 103 IPR001611 GO:0005515
Ssu1g1507 351 PANTHER LEUCINE-RICH REPEAT-CONTAINING 1 345 - -
Ssu1g1507 351 ProSiteProfiles Leucine-rich repeat profile. 58 79 IPR001611 GO:0005515
Ssu1g1507 351 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1507 Ssu-Chr1 35484205 35488743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1507 72 345 Receptor kinase-like Gene Family AT5G46330 27.410 1.92e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1507 - - gmx:100775711 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1507 1 35484205 35488743 Ssu1g1507 1 35484205 35488743 ECH
Ssu6g0681 6 10581157 10585467 Ssu1g1507 1 35484205 35488743 PCT