Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0679 ATGATAACCGGTAAGGATATTTATGATGTTTTTGCGGCTATTGTGCCCCTATACGTGGCTATGATATTAGCATATGGCTCAGTTCGGTGGTGGAAGATTTTCACACCTGATCAATGTTCTGGCATAAACCGCTTTGTTGCTGTGTTCGCAGTTCCACTGCTTTCTTTCCACTTCATCTCCTCCAACAACCCTTATGCTATGAACTACCACTTCATAGCTGCTGACTCTCTTCAAAAGGTTGTCATTCTTGGTGCTCTCTTTCTATGGAACACCTTCACAAAACATGGAAGCCTTGACTGGACCATCACCCTCTTCTCACTTTCCACTCTTCCAAACACACTTGTGATGGGGATCCCTCTATTGAGGGCCATAGGTGCCAAGCTCCTCATCACAGAACAGTTCCCTGAGACTGCAGGCTCCATCACCTCCTTCAGGGTTGACTCAGATGTTGTCTCACTCAATGGTAGAGAGCCACTGCAAACTGATGCAGAGATAGGAGAAGATGGAAAACTCCATGTGGTGGTTAAGAGATCAGCAGCTTCTTCCATGATATCTTCCTTCAACAAGTCCCATTTAACTTCCATGACACCTAGAGCATCCAATCTCACTGGGGTTGAGATCTATTCTGTTCAGTCATCAAGAGAACCAACCCCAAGAGCTTCAAGTTTTAACCAAACAGATTTTTATGCCATGTTTGCAAGCAAGGCACCGAGTCCAAAACATGGCTACACAAATAGTTTCCAGAGTAATAATGGCATTGGTGACGTTTACTCGTTGCAATCTTCAAAAGGGGCAACGCCAAGGACTTCTAACTTTGAAGAGGAGATGTTGAAGATGCATAAGAAGAAAGGAGGGAGGAGCATGAGTGGCGAGCTGTTTAATGGCGGGTTGGTTTCTTCTTACCCTCCTCCGAACCCAATGTTTTCAGGGTCTACAAGTGCTGGTGgcccaaaaaagaaagatagtgCTAGTGCCGGTGCTGCACCTAACAAGGAGTTGCACATGTTTGTTTGGAGTTCAAGCGCATCACCAGTTTCCGAGGGGAATTTGAGGCATGCAGTTAATAGAGCTGCCTCTACCGACTTTGCCACCGTCGATCCTTCGAAAGCTGTTCCACACGAAACTGTTGCCTCAAAAGCTGTTCATGAATTGATTGAGAACATGAGTCCTGGTCGTAGAGGTAGCGGAGAGAGGGAGCTTGAAACGGAGGAAGGAGCCAAGTTTCCCACAAGTGGATCTCCATACACCTGCCAGAAGAAGGTGGACATGGAAGACGGCAATGCAAACAAAAACCAACAGATGCCACCCGCAAGTGTCATGACAAGACTAATCCTCATCATGGTTTGGAGGAAACTCATAAGAAATCCTAACACCTACTCCAGTCTTTTGGGACTCGCATGGTCTCTCATATCATTTAGGTGGCACATTGAAATGCCAACTATTGTAAAAGGTTCCATCTCAATACTGTCTGATGCTGGTCTGGGAATGGCCATGTTCAGTCTAGCAGGTTTGTTCATGGCATTACAACCCAAGATCATTGCCTGTGGAAAATCTGTGGCAGCATTTTCTATGGCTGTAAGGTTCTTGACAGGTCCAGCTGTGATTGCTGCAACCTCAATAGGCACTGGAATCCGTGGAGTTCTTTTGCATGTTGCAATTGTCCAGGCTGCCCTTCCCCAAGGTATTGTTCCCTTTGTGTTCGCCAAAGAATACAATCTCCATGCAGATATACTTAGTACTGCGGTTATATTTGGAATGCTGATTGCATTGCCCATAACAATACTCTACTACGTGCTGCTTGGACTCTAA 1809 0.4527 MITGKDIYDVFAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFISSNNPYAMNYHFIAADSLQKVVILGALFLWNTFTKHGSLDWTITLFSLSTLPNTLVMGIPLLRAIGAKLLITEQFPETAGSITSFRVDSDVVSLNGREPLQTDAEIGEDGKLHVVVKRSAASSMISSFNKSHLTSMTPRASNLTGVEIYSVQSSREPTPRASSFNQTDFYAMFASKAPSPKHGYTNSFQSNNGIGDVYSLQSSKGATPRTSNFEEEMLKMHKKKGGRSMSGELFNGGLVSSYPPPNPMFSGSTSAGGPKKKDSASAGAAPNKELHMFVWSSSASPVSEGNLRHAVNRAASTDFATVDPSKAVPHETVASKAVHELIENMSPGRRGSGERELETEEGAKFPTSGSPYTCQKKVDMEDGNANKNQQMPPASVMTRLILIMVWRKLIRNPNTYSSLLGLAWSLISFRWHIEMPTIVKGSISILSDAGLGMAMFSLAGLFMALQPKIIACGKSVAAFSMAVRFLTGPAVIAATSIGTGIRGVLLHVAIVQAALPQGIVPFVFAKEYNLHADILSTAVIFGMLIALPITILYYVLLGL 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0679 602 MobiDBLite consensus disorder prediction 304 318 - -
Ssu6g0679 602 Pfam Membrane transport protein 125 597 IPR004776 GO:0016021|GO:0055085
Ssu6g0679 602 Pfam Membrane transport protein 10 124 IPR004776 GO:0016021|GO:0055085
Ssu6g0679 602 MobiDBLite consensus disorder prediction 388 416 - -
Ssu6g0679 602 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 124 - -
Ssu6g0679 602 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 125 602 - -
Ssu6g0679 602 TIGRFAM 2a69: auxin efflux carrier 1 602 IPR014024 -
Ssu6g0679 602 PANTHER AUXIN EFFLUX CARRIER COMPONENT 2 1 124 IPR033526 GO:0010315|GO:0010329
Ssu6g0679 602 PANTHER AUXIN EFFLUX CARRIER COMPONENT 2 125 602 IPR033526 GO:0010315|GO:0010329
Ssu6g0679 602 MobiDBLite consensus disorder prediction 302 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0679 Ssu-Chr6 10560055 10563267 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0679 102 602 Organic Solute Cotransporters AT5G57090 69.439 0.0 701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0679 K13947 - gmx:100305383 1078.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0679 6 10560055 10563267 Ssu6g0679 6 10560055 10563267 ECH
Ssu6g0679 6 10560055 10563267 Ssu1g1510 1 35534585 35540797 PCT