Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1510 ATGGGATTACACATGTTTGTTTGGAGCTCGAGTACATCACCAACTTCTGAGGATAATAATCCGAGACATGTAGTGAATGGAAATGGCTCCTTTGACTTTGGACCTTCCAAGGCTGTTGATTTTCCACACAAAACTACTCCCTCAAAAGCAATTGTGAATGAGCTTGAAATTGAGGAAGGAATTGAACATCCTGTTATGGGGAGCCGGAAAGAGGTGAGCGATGAAGAAGACGATGCAAACAAAAAGCAAGAAATGCCACGTGCTAGTGTCATGATAAGGCTTCTTCTCATCATGGTTTGGAGGAATCTCATAAGAAATCCCAATACCTACGCGAGTGTTTTGGGCCTCGTTTGGTCTCTCAtattttttagCAGGTGGAACATCAAAACGCCATCTATTATAGCAGGTTCCATTAAAATACTGTCTGACACCGGGCTGGGAATGGCCATGTTCAGTCTAGGTCTATTCATGGCATTACAACCCAAGATTATTACTTGTGGAAAAACTCGAGCTGCAATTTCAATGGCAATTAGGTTCTTGGTTGGTCCAGGAGTGATTGCTGCAACCTCAATAGCCATGGGTCTCCGTGGAGCCTTTTTACATGTTTCAATTGTTCAGGCTGCTCTTCCCGAGGGTATTGTTCCCTTTGTATTCGCCAAAGAATATAATCTCCACGCGGACATACTCAGCACAGCGGTTATCTTTGGTATGGTGATTGCGTTGCCCGTAACAATAATCTACTACGTGCTTCTTGGACTGCAAATGTAA 768 0.4323 MGLHMFVWSSSTSPTSEDNNPRHVVNGNGSFDFGPSKAVDFPHKTTPSKAIVNELEIEEGIEHPVMGSRKEVSDEEDDANKKQEMPRASVMIRLLLIMVWRNLIRNPNTYASVLGLVWSLIFFSRWNIKTPSIIAGSIKILSDTGLGMAMFSLGLFMALQPKIITCGKTRAAISMAIRFLVGPGVIAATSIAMGLRGAFLHVSIVQAALPEGIVPFVFAKEYNLHADILSTAVIFGMVIALPVTIIYYVLLGLQM 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1510 255 TIGRFAM 2a69: auxin efflux carrier 75 253 IPR014024 -
Ssu1g1510 255 Pfam Membrane transport protein 75 248 IPR004776 GO:0016021|GO:0055085
Ssu1g1510 255 PANTHER AUXIN EFFLUX CARRIER COMPONENT 2 3 253 IPR033526 GO:0010315|GO:0010329
Ssu1g1510 255 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 3 253 - -
Ssu1g1510 255 MobiDBLite consensus disorder prediction 64 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1510 Ssu-Chr1 35534585 35540797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1510 3 253 Organic Solute Cotransporters AT5G57090 60.223 1.73e-101 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1510 K13947 - gmx:100788935 321.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1510 1 35534585 35540797 Ssu1g1510 1 35534585 35540797 ECH
Ssu6g0679 6 10560055 10563267 Ssu1g1510 1 35534585 35540797 PCT