Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0660 ATGGAGAACTTACCGAGGAGAAATTTTTATACCCTGctgttatttttgttggtttgtgCAGTCACAGCCTCTGTGACTTATGATCACAAAGCCATTGTTGTTAATGGGCAGAGAAGAATTTTGATCTCTGGTTCCATCCACTACCCAAGAAGCACACCTGAGATGTGGCCAGACCTTATTCAAAAGGCCAAAGATGGAGGCTTAGATGTTATCCAAACCTATGTGTTTTGGAATGGACACGAGCCTTCTCCTGGAAAGTATTATTTCGAGGATAGGTACGACTTGGTTAAGTTCATCAAGCTGGTGCAGCAAGCTGGCCTTTATGTCCATCTCCGCATTGGTCCGTACATATGTGCTGAATGGAACTTTGGGGGATTTCCTGTTTGGCTCAAGTATGTTCCGGGTATTGCTTTCAGAACAGACAACGAACCTTTCAAGGCGGCAATGCAAAAATTTACTGAGAAGATTGTCAGCATGATGAAGGCGGAGAAATTGTTCCAGACGCAGGGAGGTCCAATAATTATGTCACAGATAGAAAACGAATTTGGACCGGTGGAGTGGGAAATTGGTGCCCCTGGAAAAGCCTACACCAAATGGGCTGCTCAAATGGCTGTTGGTTTAGATACTGGTGTCCCCTGGATTATGTGCAAGCAAGAAGATGCTCCCGATCCTGTTATTGACACCTGCAATGGGTTCTACTGCGAAAACTTTACTCCCAACAAGAAATACAAACCCAAAATGTGGACAGAGAACTGGACTGGCTGGTACACCGAGTTTGGTGGTGCGGTCCCTCGTAGGCCTGCAGAGGACTTGGCATTCTCAGTTGCCAGATTCGTACAGAATGGTGGTTCATTTGTTAATTACTATATGTACCATGGAGGAACTAACTTTGACCGGACATCCGGTGGCCCCTTCATTGCCACCAGCTATGACTATGATGCTCCCATTGATGAATACGGCCTTCTAAATGAACCAAAATGGGGGCATTTGAGAGATTTGCATAAAGCAATAAAGCTATGTGAGCCAGCTTTAGTGTCTGTAGATCCTACAGTGTCATGGCCTGGAAATAACCTTGAGGTACATGTGTTCAAGACTTCTGGTGCTTGTGCTGCATTCCTTGCAAATTATGACACCACATCTTCCGCAACAGTTACATTTGGAAATGGACAATATGACCTACCACCTTGGTCTATCAGCATCCTTCCTGACTGCAAAACTGCAGTTTTCAACACTGCAAGGcTTGGTGCTCAAAGCTCCTTGATGAAGATGACTGCTGTGAACAGTGCATTTGATTGGCAGTCATACAATGAGGAGCCTGCATCGTCCAATGAAGATGATTCCTTGACAGCATATGCACTCTGGGAGCAGATTAATATCACCCGAGATTCTACAGATTATTTGTGGTATATGACAGATGTCAACATTGATGCAAATGAAGGTTTTATAAAGAATGGACAATCTCCTGTTCTTACCGTAATGTCAGCAGGCCATGCTTTGCATGTTTTCATTAATGGTCAACTTTCAGGTACTGTGTATGGGGGATTGGACTTTCCTAAATTAACATTTAGCGACAGTGTTAAGCTGAGGGTCGGCAATAACAAGATTTCTTTACTTAGTATCGCTGTGGGTCTCCCGAATGTTGGGGTACACTTTGAGACATGGAATGCTGGGGTGTTAGGCCCAGTCACACTTAAGGGTCTAAATGAGGGGACTAGAGACTTGTCTCAACAGAAATGGTCTTACAAGATTGGTCTCCAGGGTGAAGCCTTAAACCTTAACACGACAACTTTTAGCACACCAGCAGGCAATGATCCATTGGCTCTAGACATGATTAGCATGGGAAAGGGTCAAGTATGGATAAACGGTCGAAGCATTGGACGCCATTGGCCTGGATATATAGCACATGGTAGTTGTGGGGATTGTTATTATGCTGGAACTTACACTGATAAAAAATGCCGGACAAATTGTGGAGAACCCTCCCAGAGATGGTACCATATTCCTCGGTCGTGGCTGAACCCAAGTGGGAACTACCTGGTTGTGTTTGAAGAATGGGGAGGTGACCCTACTGGAATTTCTTTGGTGAAAAGAACAACAGCAAGTGTGTGTGCTGATATATATGAAGGGCAACCAACTCTGAGGAACAGGCAGATGCTAGACTCTGGCAAAGTTAATAGACCCAAGGCTCACTTGTGGTGTCCACCAGGACAAAAGATCTCCCAGATTAAATTTTCTAGTTATGGATTGCCACAGGGAACTTGTGGAAACTATAGAGAGGGAAGCTGTCATGCTCATAAATCATATGATGCTCCTCAAAAGaaCTGCATTGGCAAGCAATCTTGCTTGGTTACTGTAGCTCCTGGAGTTTTTGGGGGAGACCCGTGTCCGGGAATTGCAAAGAAGCTCTCACTTGAGGCACTATGCAGCTAG 2427 0.4442 MENLPRRNFYTLLLFLLVCAVTASVTYDHKAIVVNGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEDRYDLVKFIKLVQQAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIAFRTDNEPFKAAMQKFTEKIVSMMKAEKLFQTQGGPIIMSQIENEFGPVEWEIGAPGKAYTKWAAQMAVGLDTGVPWIMCKQEDAPDPVIDTCNGFYCENFTPNKKYKPKMWTENWTGWYTEFGGAVPRRPAEDLAFSVARFVQNGGSFVNYYMYHGGTNFDRTSGGPFIATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVSWPGNNLEVHVFKTSGACAAFLANYDTTSSATVTFGNGQYDLPPWSISILPDCKTAVFNTARLGAQSSLMKMTAVNSAFDWQSYNEEPASSNEDDSLTAYALWEQINITRDSTDYLWYMTDVNIDANEGFIKNGQSPVLTVMSAGHALHVFINGQLSGTVYGGLDFPKLTFSDSVKLRVGNNKISLLSIAVGLPNVGVHFETWNAGVLGPVTLKGLNEGTRDLSQQKWSYKIGLQGEALNLNTTTFSTPAGNDPLALDMISMGKGQVWINGRSIGRHWPGYIAHGSCGDCYYAGTYTDKKCRTNCGEPSQRWYHIPRSWLNPSGNYLVVFEEWGGDPTGISLVKRTTASVCADIYEGQPTLRNRQMLDSGKVNRPKAHLWCPPGQKISQIKFSSYGLPQGTCGNYREGSCHAHKSYDAPQKNCIGKQSCLVTVAPGVFGGDPCPGIAKKLSLEALCS 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0660 808 Pfam Galactose binding lectin domain 730 807 IPR000922 GO:0030246
Ssu6g0660 808 ProSiteProfiles SUEL-type lectin domain profile. 722 808 IPR000922 GO:0030246
Ssu6g0660 808 Pfam Beta-sandwich domain in beta galactosidase 344 413 IPR041392 -
Ssu6g0660 808 PRINTS Glycosyl hydrolase family 35 signature 111 130 IPR001944 GO:0004553|GO:0005975
Ssu6g0660 808 PRINTS Glycosyl hydrolase family 35 signature 588 602 IPR001944 GO:0004553|GO:0005975
Ssu6g0660 808 PRINTS Glycosyl hydrolase family 35 signature 615 631 IPR001944 GO:0004553|GO:0005975
Ssu6g0660 808 PRINTS Glycosyl hydrolase family 35 signature 168 183 IPR001944 GO:0004553|GO:0005975
Ssu6g0660 808 PRINTS Glycosyl hydrolase family 35 signature 284 299 IPR001944 GO:0004553|GO:0005975
Ssu6g0660 808 PRINTS Glycosyl hydrolase family 35 signature 247 262 IPR001944 GO:0004553|GO:0005975
Ssu6g0660 808 PRINTS Glycosyl hydrolase family 35 signature 304 320 IPR001944 GO:0004553|GO:0005975
Ssu6g0660 808 PRINTS Glycosyl hydrolase family 35 signature 35 52 IPR001944 GO:0004553|GO:0005975
Ssu6g0660 808 PRINTS Glycosyl hydrolase family 35 signature 56 74 IPR001944 GO:0004553|GO:0005975
Ssu6g0660 808 SUPERFAMILY Galactose-binding domain-like 398 568 IPR008979 -
Ssu6g0660 808 Gene3D - 568 702 - -
Ssu6g0660 808 Gene3D - 719 808 IPR043159 -
Ssu6g0660 808 PANTHER BETA-GALACTOSIDASE 595 697 - -
Ssu6g0660 808 PANTHER BETA-GALACTOSIDASE 11 595 - -
Ssu6g0660 808 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 170 182 IPR019801 GO:0004553|GO:0005975
Ssu6g0660 808 Pfam Glycosyl hydrolases family 35 32 336 IPR031330 -
Ssu6g0660 808 PANTHER BETA-GALACTOSIDASE RELATED 595 697 IPR001944 GO:0004553|GO:0005975
Ssu6g0660 808 PANTHER BETA-GALACTOSIDASE RELATED 11 595 IPR001944 GO:0004553|GO:0005975
Ssu6g0660 808 SUPERFAMILY (Trans)glycosidases 24 341 IPR017853 -
Ssu6g0660 808 SUPERFAMILY Galactose-binding domain-like 572 714 IPR008979 -
Ssu6g0660 808 Gene3D Glycosidases 18 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0660 Ssu-Chr6 10284305 10289500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0660 12 808 Glycoside Hydrolase AT3G13750 69.928 0.0 1228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0660 - - gmx:106795462 1614.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0660 6 10284305 10289500 Ssu6g0660 6 10284305 10289500 ECH
Ssu6g0660 6 10284305 10289500 Ssu1g1523 1 35856486 35862195 PCT