Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1523 ATGGGGAAGAGAGAGTTCCATGGGGTGGTGTTGATGTTGTTTTTGTGGGTTTGTGGTGTCACAGCCTCTGTGACTTATGACCACAAAGCCATTATTGTTGATGGGAAGAGAAGAATTTTGATCTCTGGCTCCATTCACTACCCAAGAAGCACACCTCAGATGTGGCCAGACCTTATTCAAAAGGCCAAAGATGGAGGCCTTGATGTCATTCAGACCTATGTGTTCTGGAATGGACATGAACCTTCTCCTGGAAAATACTATTTCGAAGATAGGTTTGACTTGGTTAAGTACGTGAAGCTGGTGCAGCAAGCAGGCCTGTATGTTCATCTCCGTATCGGTCCCTACGTATGTGCTGAATGGAACTTCGGGGGATTTCCTGTTTGGCTCAAGTACGTTCCGGGCATTGCTTTCAGAACCGACAATGAGCCGTTCAAGGCGGCAATGCAAAAATTCACAGCTAAGATTGTTAGCTTGATGAAAGAAGAGAGGTTGTTTCAATCCCAGGGTGGGCCAATAATTATGTCACAGATAGAGAACGAGTATGGACCCGTGGAATGGGAAATTGGTGCTCCTGGAAAAGCTTATACGAAATGGGCTGCTCAAATGGCTGTTGGTCTAGACACTGGTGTTCCATGGGTTATGTGCAAGCAAGAAGATGCTCCTGATCCTGTTATTGACACCTGCAATGGGTTCTACTGTGAAAACTTCAAGCCCAACAAGAACAACAAACCTAAAATGTGGACTGAGAATTGGACTGGCTGGTACACTGATTTTGGTGCTGCAAACCCTCGTAGACCAGCAGAAGACTTGGCATACTCAGTTGCGAGATTCATACAGAATGGTGGCTCATTCGTTAACTACTACATGTACCATGGAGGAACTAACTTTGGTCGGACATCCGGTGGACTCTTCATTGCCACTAGCTATGACTATGATGCGCCGCTTGATGAATACGGACTTCAAAATGAACCAAAGTGGGGGCATTTGAGAGATTTGCATAAAGCAATAAAACAATGTGAGCCTGCTTTAGTGTCTGCAGATCCCAAAGTGACATCGCTTGGATATAACCTTGAGGCACATGTGTTCACGGCCCCTGGTGTCTGTGCTGCATTCATTGCAAATTATGACACCAAATCTTCTGCAAAAGCTACATTTGGAAATGGGCAATACGATCTACCACCTTGGTCTATCAGTATTCTTCCTGACTGCAAAACTGCTGTTTACAACACAGCAAAGGTTGGTGTCAACAGCTGGCTGAAAAAGATGACTCCTGTACACAGTGGATTTGCTTGGCAGTCATATAATGAAGAACCTGCCTCATCCAGTCAAGATGATTCCATTGCAGCAGATGCACTTTGGGAGCAGGTCAATGTGACCCGCGATTCTTCAGATTATTTGTGGTATATGACAGATGTCAACATTAATGCTAATGAAGGTTTTATAAAGGGTGGGCAATCTCCTGTTCTTACTGTAATGTCAGCAGGCCATGTTCTCCATGTTTTCATTAATGGTCAACTTTCAGGAACTGTGTATGGGGGATTGGGGAATCCTAAATTAACATTTAGTGACAATGTGAAGCTGAGGGTTGGCAATAACAAGCTTTCTTTGCTTAGTGTTGCCGTTGGTCTCCCGAATGTTGGTTTGCACTTTGAAACATGGAATGCGGGGGTGTTAGGCCCAGTCACTCTGAAGGGTCTAAATGAGGGGACACGGGACTTGTCCAAACAGAAATGGTCTTACAAGGTTGGACTGAAAGGTGAAGCCTTGAGCCTTCACACTGTAAGTGGGAGTAGCTCTGTTGAATGGACACGGGGATCATTAGTGGCTAAAAAACAACCTTTGACATGGTACAAGACAACTTTTAGCGCACCAGCTGGCAATGATCCATTGGCTCTAGATATGAGTAGCATGGGAAAGGGTGAAGTATGGATAAATGGTCAGAGCATTGGTCGCCATTGGCCTGGATATATAGCACATGGTAGTTGTAATCAATGTAATTATGCTGGATATTATACTGATAAAAAATGCCGGACAAATTGTGGACAACCCTCCCAAAGATGGTATCATGTTCCTCGCTCATGGCTGAACTCAGGTGGTAATATCTTGGTTGTGTTTGAAGAATGGGGAGGTGATCCTAATGGAATTGCTTTGGTGAAAAGAACATGA 2166 0.4451 MGKREFHGVVLMLFLWVCGVTASVTYDHKAIIVDGKRRILISGSIHYPRSTPQMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEDRFDLVKYVKLVQQAGLYVHLRIGPYVCAEWNFGGFPVWLKYVPGIAFRTDNEPFKAAMQKFTAKIVSLMKEERLFQSQGGPIIMSQIENEYGPVEWEIGAPGKAYTKWAAQMAVGLDTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKNNKPKMWTENWTGWYTDFGAANPRRPAEDLAYSVARFIQNGGSFVNYYMYHGGTNFGRTSGGLFIATSYDYDAPLDEYGLQNEPKWGHLRDLHKAIKQCEPALVSADPKVTSLGYNLEAHVFTAPGVCAAFIANYDTKSSAKATFGNGQYDLPPWSISILPDCKTAVYNTAKVGVNSWLKKMTPVHSGFAWQSYNEEPASSSQDDSIAADALWEQVNVTRDSSDYLWYMTDVNINANEGFIKGGQSPVLTVMSAGHVLHVFINGQLSGTVYGGLGNPKLTFSDNVKLRVGNNKLSLLSVAVGLPNVGLHFETWNAGVLGPVTLKGLNEGTRDLSKQKWSYKVGLKGEALSLHTVSGSSSVEWTRGSLVAKKQPLTWYKTTFSAPAGNDPLALDMSSMGKGEVWINGQSIGRHWPGYIAHGSCNQCNYAGYYTDKKCRTNCGQPSQRWYHVPRSWLNSGGNILVVFEEWGGDPNGIALVKRT 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1523 721 PANTHER BETA-GALACTOSIDASE 7 721 - -
Ssu1g1523 721 Gene3D - 585 721 - -
Ssu1g1523 721 PANTHER BETA-GALACTOSIDASE RELATED 7 721 IPR001944 GO:0004553|GO:0005975
Ssu1g1523 721 Pfam Glycosyl hydrolases family 35 31 335 IPR031330 -
Ssu1g1523 721 SUPERFAMILY (Trans)glycosidases 24 340 IPR017853 -
Ssu1g1523 721 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 169 181 IPR019801 GO:0004553|GO:0005975
Ssu1g1523 721 SUPERFAMILY Galactose-binding domain-like 397 567 IPR008979 -
Ssu1g1523 721 SUPERFAMILY Galactose-binding domain-like 577 716 IPR008979 -
Ssu1g1523 721 Gene3D - 437 576 - -
Ssu1g1523 721 Gene3D Glycosidases 18 340 - -
Ssu1g1523 721 PRINTS Glycosyl hydrolase family 35 signature 167 182 IPR001944 GO:0004553|GO:0005975
Ssu1g1523 721 PRINTS Glycosyl hydrolase family 35 signature 246 261 IPR001944 GO:0004553|GO:0005975
Ssu1g1523 721 PRINTS Glycosyl hydrolase family 35 signature 612 626 IPR001944 GO:0004553|GO:0005975
Ssu1g1523 721 PRINTS Glycosyl hydrolase family 35 signature 639 655 IPR001944 GO:0004553|GO:0005975
Ssu1g1523 721 PRINTS Glycosyl hydrolase family 35 signature 110 129 IPR001944 GO:0004553|GO:0005975
Ssu1g1523 721 PRINTS Glycosyl hydrolase family 35 signature 283 298 IPR001944 GO:0004553|GO:0005975
Ssu1g1523 721 PRINTS Glycosyl hydrolase family 35 signature 303 319 IPR001944 GO:0004553|GO:0005975
Ssu1g1523 721 PRINTS Glycosyl hydrolase family 35 signature 34 51 IPR001944 GO:0004553|GO:0005975
Ssu1g1523 721 PRINTS Glycosyl hydrolase family 35 signature 55 73 IPR001944 GO:0004553|GO:0005975
Ssu1g1523 721 Pfam Beta-sandwich domain in beta galactosidase 343 413 IPR041392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1523 Ssu-Chr1 35856486 35862195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1523 9 720 Glycoside Hydrolase AT3G13750 72.168 0.0 1095
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1523 - - gmx:100781959 1405.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0660 6 10284305 10289500 Ssu1g1523 1 35856486 35862195 PCT