Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0654 ATGGCAGACCCAGCAAGTTTCATAGCCGGCTGGTTAACTCCCTCGTTCCTCTTCATCTTCGTCAACCTCGTCATCGGCACCATAGCAATCGCTTCTCGCTTCGGTGCCCCTCCCAAAAACCAACCCCAACTCGTTCGCTCACCCTCCTTTCTCCAACGAGTCAGGTCCTTCAATCTCGCTCACTATACCCATTACTACCAACCAGAGTGCACTCAGCCCCAGCTCGTTCGAACACCCTCGCTCTTAGAGCGAGTCACGTCCTTCAATCTCACCCTCCACAAACACGAACCCACACATGCAGAAACGCAACCCGAAAACCCGGAACCGGTTcggacaccctcgctcttggAGCGAGTCACGTCCTTCAATCTCGCTCTCCACAAACACGAACCCGCACGTGCAGAAACACAACACATCCAACCCGAACCCGAAGCTGAACGCCCGGAACTGGTTCGGAGTCCCTCGCTCTTGCAGCGGATTCGGTCCACGAACTTGTCGCGTCTCTACAGATCGGACTCCGCACACCGAGAGGATCCGGATTTGTCGGATCCGGGTCTCGGTTCGGGTAAGGCGGAGATGCGGAAATCGGCGAGCGAGAAGGCGGGTTCGATGGAGAGCGAATgggaggaggaggtggagagGCGGAGGCCGGCGACGATGAGAGATGAAACGACGTCGTGGACAGAAGACGAAGAGGTGGACGCGAAAGCCGACGATTTCATCAACCGGTTCAAGAGGCAGTTGAGGTTGCAGAGGATTGACTCGCTTCTCCGTTGCAGAGAGATGCTCAGAGGAGGGAACTGGTcagaaaagagaaattaa 822 0.5255 MADPASFIAGWLTPSFLFIFVNLVIGTIAIASRFGAPPKNQPQLVRSPSFLQRVRSFNLAHYTHYYQPECTQPQLVRTPSLLERVTSFNLTLHKHEPTHAETQPENPEPVRTPSLLERVTSFNLALHKHEPARAETQHIQPEPEAERPELVRSPSLLQRIRSTNLSRLYRSDSAHREDPDLSDPGLGSGKAEMRKSASEKAGSMESEWEEEVERRRPATMRDETTSWTEDEEVDAKADDFINRFKRQLRLQRIDSLLRCREMLRGGNWSEKRN 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0654 273 MobiDBLite consensus disorder prediction 129 149 - -
Ssu6g0654 273 Pfam Cotton fibre expressed protein 230 264 IPR008480 -
Ssu6g0654 273 MobiDBLite consensus disorder prediction 129 232 - -
Ssu6g0654 273 MobiDBLite consensus disorder prediction 193 226 - -
Ssu6g0654 273 PANTHER COTTON FIBER (DUF761) 189 266 - -
Ssu6g0654 273 PANTHER COTTON FIBER (DUF761) 3 65 - -
Ssu6g0654 273 Pfam Domain of unknown function (DUF4408) 6 34 IPR025520 -
Ssu6g0654 273 PANTHER DUF4408 DOMAIN PROTEIN 3 65 - -
Ssu6g0654 273 PANTHER DUF4408 DOMAIN PROTEIN 189 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0654 Ssu-Chr6 10175907 10176728 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0654 - - var:108322704 335.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0654 6 10175907 10176728 Ssu6g0654 6 10175907 10176728 ECH
Ssu6g0654 6 10175907 10176728 Ssu1g1529 1 36047170 36048129 PCT