Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1529 atgAGTGAAACAGCAGGGGCTTCAGTTTACACTGCGATGGCAAGTTGGCTCACGCCCTCGTGTCTATTCGTCATCATAAACCTCGTCATCGGCACCATAGCCATCACCTCTCGTTTCGCCAACACCACAAAAAAGCAACACCAACTCGCCCGTTCTCCCTCCATGCTAAACCGACTCACGTCCTTCAACCTCCGTTATCACAAATATGAACCAACAACACCACATCACAGCGTTGTTGACCCGGTTCAGAGTCCCGACTCACCCCGGCTCGACCAGGTTCCTTCCTCGTCCTTGCTGGACCGAGCTAGGTCATCCAATCTCGACCTTGCCAAAGGGGAGATTGAAGGACTTAACCTGGTCCAGAGCCCCGACTCGCCCCAGCTCGACCAGCTTCCTTCCTCGTCCTTGCTGGACCGAGTCAGGTCATCCAATCTCGACCTTGCCAAAAGGGAGATTGAAGGACTTAACTCGGTCCAGAGCCCTGACTCGTCTCGGCTCGACCGAGTTCCGTCCTCATCCTTGTTGGACTGGGTCAAGTCATTTAATCTCGGTTTCTATAAAGAGGAGATTGAAGGACTTAACCCGGTCCAAAGCCCCGACTTGCCCCGGCTCGATCGAGTTCCCTCCCCGTCCTTGTTGGACCGGGTCAGGTCCTTCAATCTCGGCCTCTACAAAGCAGAGGTTGAAAGACCTGACCCAATCCAGCAGCAACTGACCCGCTCTCCCTCGATCCTCCAGCGACTTAAGTCCTTGACGTTTGACAGATCGGGGTCGGTGAAGGAGGCCGAGCCTGAATACGAAGCTGAGGTTACGGGTGGTGGGGAGTTGGTGGAGGAAAGGGAAGAAGAGGAGAAGGTAGACGCGAAGGCTGATGATTTTATCTATAGGTTTAGGCAGCAACTGAGGTTGCAGAGGCTTGACTCTATTCTACGTTACAGGGATATGCTTAAACGAAACTGA 960 0.5344 MSETAGASVYTAMASWLTPSCLFVIINLVIGTIAITSRFANTTKKQHQLARSPSMLNRLTSFNLRYHKYEPTTPHHSVVDPVQSPDSPRLDQVPSSSLLDRARSSNLDLAKGEIEGLNLVQSPDSPQLDQLPSSSLLDRVRSSNLDLAKREIEGLNSVQSPDSSRLDRVPSSSLLDWVKSFNLGFYKEEIEGLNPVQSPDLPRLDRVPSPSLLDRVRSFNLGLYKAEVERPDPIQQQLTRSPSILQRLKSLTFDRSGSVKEAEPEYEAEVTGGGELVEEREEEEKVDAKADDFIYRFRQQLRLQRLDSILRYRDMLKRN 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1529 319 PANTHER COTTON FIBER (DUF761) 280 319 - -
Ssu1g1529 319 PANTHER COTTON FIBER (DUF761) 7 146 - -
Ssu1g1529 319 Pfam Domain of unknown function (DUF4408) 8 39 IPR025520 -
Ssu1g1529 319 MobiDBLite consensus disorder prediction 262 282 - -
Ssu1g1529 319 Pfam Cotton fibre expressed protein 284 318 IPR008480 -
Ssu1g1529 319 MobiDBLite consensus disorder prediction 72 97 - -
Ssu1g1529 319 PANTHER DUF4408 DOMAIN PROTEIN 280 319 - -
Ssu1g1529 319 PANTHER DUF4408 DOMAIN PROTEIN 7 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1529 Ssu-Chr1 36047170 36048129 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1529 - - gmx:102670321 259.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1529 1 36047170 36048129 Ssu1g1529 1 36047170 36048129 ECH
Ssu6g0654 6 10175907 10176728 Ssu1g1529 1 36047170 36048129 PCT