Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0653 ATGGctagtcattttataatttcaaaaccttTGATTCTGCTATGGCTAACCTACATAGTGCTCACACAGGCACGAACACAGCCATGGTCAGCACTCAAAGCACCAAAAGAACTGACCCTGAAGCTTATTCGTGACCCCGTGTCCCTTTCACTAGCCTCAACCGATTATGGTCACATAGTTCATGACAACCCTTTTGCAATTTTTGCCCCATCGTCCATCAGTGACATATCCAACTTgataaatttctcaaattcTCTGGCCATCCCTTTCACCATAGCCCCTAGAGGGCAAGCCCACTCGGTTCATGGACAAGCCATGACAAATGATGGGGTCGTGGTGAACATGACCGAGTTGAACGGCTGTAGAAATGGGGCTGGAATTGTAGTATCTGATGGCCCAACTGCTCCATATGCTGATGTGGGCGGTGAACAAATTTGGATTGATGTGTTGCATGCAACACTCGAGCGCGGACTTACACCCCTCTCTTGGACAGACTACTTGCTCTTATCGGTTGGTGGAACTCTCTCCAATGCTGGGATAAGTGGCCAAACCTTCAGGTTTGGTCCTCAGATTTCCAATGTTCATGAATTGGATGTTGTTACGGGGAAAGGGGACCTTGTGACTTGTTCTGCGGAGATGAACTCGGAGTTATTTTACGCTGTTCTAGGAGGTTTAGGTCAATTTGGGATTATAGCTAGAGCAAGAATAGCTCTTGGGCCCGCACCAACGAGGGTGAAGTGGCTCCGTTTGCTTTACAACGACTTCTCTGCATTTTCTAAAGACCAAGAATACTTAATCTCATTCAATGGGAGAAACGAGACTAATGCAGCTGATTTTGTAGAAGGTTTCCTTCTGCTAAATCAGCCACCACTGGACCTTTCCTTTTATCCAGCACCTGATCAACCTCGCATAACTTCCCTTGTAACTCAATACGGCATCATCTACGTCATAGAACTTGTCAAATATTACGATAATAGTTCTCTAGAACATGTTGATGAGGATGTCAAACTTTTGGTCCAGGGTTTAAAGTTCGTTCCTACGTTTATATTCGAAAAAGATGTGTCGTACGAAGATTTCCTAAACAGAGTTCATACTGACGAGCTTTTCCTAAGGTCACAAGGGCTTTGGGATGTCCCTCATCCTTGGTTAAACCTCTTTGTTCCAGGATCTCGAATCTCGGGTTTCGATGAAGGTGTGTTCAAGGGTATTATTCTCAAGCAAAATATTACTGCAGGACTTGTGATAATCTATCCCGTGAACCGAGCCAAGTGGGATGATAAGATGTCAGCAGTTACACCTGATGAAGATGTTTTCTACGTCGTGTCACTTCTTCATGCAACTAGTTTTGATATGTTGGAGGAATTTCAGGCTCAAAACCAACAGATATTACAGTTCTGTGGGGATGCTGGTATTGGGATCAAGCAATATCTTCCCCAAAACAAAACACGGGAACAATGGGTGGAACACTTTGGCCCCAAATGGACAATTTTCGAAGAAAGAAAAGCTCAATTTGATCCCAACAGAATATTGTCACCTGGACAGGggattttcaattatataaaaaaataa 1569 0.427 MASHFIISKPLILLWLTYIVLTQARTQPWSALKAPKELTLKLIRDPVSLSLASTDYGHIVHDNPFAIFAPSSISDISNLINFSNSLAIPFTIAPRGQAHSVHGQAMTNDGVVVNMTELNGCRNGAGIVVSDGPTAPYADVGGEQIWIDVLHATLERGLTPLSWTDYLLLSVGGTLSNAGISGQTFRFGPQISNVHELDVVTGKGDLVTCSAEMNSELFYAVLGGLGQFGIIARARIALGPAPTRVKWLRLLYNDFSAFSKDQEYLISFNGRNETNAADFVEGFLLLNQPPLDLSFYPAPDQPRITSLVTQYGIIYVIELVKYYDNSSLEHVDEDVKLLVQGLKFVPTFIFEKDVSYEDFLNRVHTDELFLRSQGLWDVPHPWLNLFVPGSRISGFDEGVFKGIILKQNITAGLVIIYPVNRAKWDDKMSAVTPDEDVFYVVSLLHATSFDMLEEFQAQNQQILQFCGDAGIGIKQYLPQNKTREQWVEHFGPKWTIFEERKAQFDPNRILSPGQGIFNYIKK 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0653 522 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 242 517 IPR015345 GO:0009690|GO:0019139|GO:0050660
Ssu6g0653 522 Pfam FAD binding domain 66 210 IPR006094 GO:0050660
Ssu6g0653 522 Gene3D - 115 243 IPR016169 -
Ssu6g0653 522 SUPERFAMILY FAD-binding/transporter-associated domain-like 42 240 IPR036318 GO:0050660
Ssu6g0653 522 SUPERFAMILY FAD-linked oxidases, C-terminal domain 242 518 IPR016164 GO:0003824|GO:0050660
Ssu6g0653 522 PANTHER CYTOKININ DEHYDROGENASE 1, FAD AND CYTOKININ-BINDING PROTEIN 8 518 - -
Ssu6g0653 522 PANTHER GULONOLACTONE OXIDASE 8 518 - -
Ssu6g0653 522 Gene3D - 244 476 IPR016170 -
Ssu6g0653 522 ProSiteProfiles PCMH-type FAD-binding domain profile. 60 241 IPR016166 GO:0071949
Ssu6g0653 522 Gene3D - 46 517 IPR016167 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0653 Ssu-Chr6 10149789 10154698 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0653 K00279 - gmx:100816815 896.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0653 6 10149789 10154698 Ssu1g1531 1 36073909 36134795 PCT