Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1531 atgGCGAGGAATATAGTGTTTTCAAAAGTTATGGCTCTACTATGGCTATCCAGCATAGTGTTCACACAAGCACAACCACGACCGTGGTCAGCATTCCAAGCACCCAAAGAGCTAGCCCGAAAGCTTACTCGTAACCCTCAAACCCTTTCACTAGCCTCAATCGATTATGGCCAAATAGTTCACCAAACCCCATTTGCAGTTTTTGAGCCATCTTCCGTTAGTGATATCTCGGACTTGATAAGTTTCTCAAACTCTCTTGCCATCCCTTTCACCATTGCAACAAGAGGGCAAGCCCACTCGGGTCTTGGACAAACCATGACACGAGATGGAGTGGTGCTCAATATGACTCACCTCAACGCTTTCAGAAACGGGTCAGGGATTTTGGTGTCTTGTGATGGGAAAAGTCCATTGGGTTGCTATGCTGATGTGGGTGGTGAGCAAATGTGGATTGATGTGTTGCATGCAACCCTTAAACATGGACTCACACCTCTAGCTTTTACCGACTACTTGTATTTGTCGGTTGGGGGCACGCTCTCTAATGCTGGGATCAATGGCCGAGACTTTCGATTCGGACCTCAGATCTCTAATGTTCTTGAATTGGATGTTGTTACAGGGAAAGGAGACCTTGTGACTAGCTCTATGGAGAAGAACTCGGAGACATTTTACGCTGTTCTTGGAGGATTAGGTCAATTTGGGGTGATAACAAGAGCAAGAATAATGCTAGGACCTGCACCCACTAGGGTGAATTGGCTCCGCCTACTTTACAACAATTTTACTGTATTTTCTAGAGACCAAGAACATTTAATCTCATTCAATGAAAGGAATGACACTACCGCAGCAGATTATATAGAAGGTATGCTTCTATTGAATCAACCGCCACTGGATCTTTCCTTTTACCCAACTTCTGATCAACAAAGGATAACTTCCTTGGTAACTCAATATGGTATTATCTACATCATAGAGCTTGTCAAATACTATGACAACAACTCTGAAGCACGCGTCAAGGAGGTAGTTGCAAATTTGGTGAAAGGGTTGAATTTTGTACCTACATTTATGTTCGAAAATGATGCGTCGTATGAGGAGTTTGTGAACAGAGTTCATGCTGAGGAGCGAGTTCTTAGGTTAGAAGGACTTTGGGAAGTTCCTCATCCTTGGTTGAACATCTGGGTTCCAAGATCTCGAATCTCGGATTTTAATGAAGGTGTTTTCAAGGACATTATTCTTAAGCAAAATATTACGGGTGGAATTTCTTTAGTCTACCCCATGAACCGAAACAAGTAA 1281 0.4301 MARNIVFSKVMALLWLSSIVFTQAQPRPWSAFQAPKELARKLTRNPQTLSLASIDYGQIVHQTPFAVFEPSSVSDISDLISFSNSLAIPFTIATRGQAHSGLGQTMTRDGVVLNMTHLNAFRNGSGILVSCDGKSPLGCYADVGGEQMWIDVLHATLKHGLTPLAFTDYLYLSVGGTLSNAGINGRDFRFGPQISNVLELDVVTGKGDLVTSSMEKNSETFYAVLGGLGQFGVITRARIMLGPAPTRVNWLRLLYNNFTVFSRDQEHLISFNERNDTTAADYIEGMLLLNQPPLDLSFYPTSDQQRITSLVTQYGIIYIIELVKYYDNNSEARVKEVVANLVKGLNFVPTFMFENDASYEEFVNRVHAEERVLRLEGLWEVPHPWLNIWVPRSRISDFNEGVFKDIILKQNITGGISLVYPMNRNK 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1531 426 Gene3D - 115 246 IPR016169 -
Ssu1g1531 426 PANTHER GULONOLACTONE OXIDASE 9 426 - -
Ssu1g1531 426 Gene3D - 247 426 IPR016170 -
Ssu1g1531 426 Gene3D - 46 114 IPR016167 -
Ssu1g1531 426 ProSiteProfiles PCMH-type FAD-binding domain profile. 60 244 IPR016166 GO:0071949
Ssu1g1531 426 SUPERFAMILY FAD-binding/transporter-associated domain-like 42 243 IPR036318 GO:0050660
Ssu1g1531 426 PANTHER CYTOKININ DEHYDROGENASE 1, FAD AND CYTOKININ-BINDING PROTEIN 9 426 - -
Ssu1g1531 426 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 245 426 IPR015345 GO:0009690|GO:0019139|GO:0050660
Ssu1g1531 426 SUPERFAMILY FAD-linked oxidases, C-terminal domain 245 426 IPR016164 GO:0003824|GO:0050660
Ssu1g1531 426 Pfam FAD binding domain 66 211 IPR006094 GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1531 Ssu-Chr1 36073909 36134795 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1531 K00279 - gmx:100793158 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0653 6 10149789 10154698 Ssu1g1531 1 36073909 36134795 PCT