Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0652 ATGGCTGTAAACTACCCTTTATCAACCTACTTtatactactactaataataaccATAACCCGTTTGATATCCACTGTGGGAAAAACCGAGCAATGGAAAGCTCCGCTTCTACCGGAGCTTGACATTGACAATATATCCCACAAATTCCATGACGACCCTGAAACCATTCAAATGGCTTCTAGGGACTATGGAAACATGGTGCATGAATTCCCAGCTGTTGTGTTTCGTCCATCTTCTATAGACGACATAGTCACCTTGATAAAATCCTCATACAATAGCTTTGCCCCTTTTAACATAGCTGCTAGGGGCCAAGGTCACTCTACTCATGGACAAGCCATGGCTCGTGATGGGGTCGTGGTTGACATGGCCAGCCtcagaaaacaaacaaatgggGTTGCGATTAGTGTCTCTAAGGACCCTTTAATAGGCCACTATGCTGATGTTGGAGGGGAACAACTCTGGATTGATGTGCTACATGCCACACTTGAACATGGACTTGCACCCGTTTCTTGGACCGATTATTTGTACTTAACCGTGGGAGGGACACTTTCCAACGCTGGGATTAGTGGCCAGACTTTCCGCTATGGACCTCAAATCAGCAACGTTCATGAAATGGATGTGATCACCGGAAAAGGAGAGTTTGTAACCTGCTCTTCCCAGAAGAACTTGGAGTTATTCCACGCGGTTCTTGGAGGTTTAGGACAATTTGGAGTTATAGCAAGGGCGAGAATTGCTCTTGAGCCAGCACCCAAAAGGGTTAAGTGGGTCAGACTACTTTATAGTGACTTCTCTGCTTTTACCAAAGACCAGGAACGTTTAATCTCAATCAATGGAAGGAAACAAAAGACTGCATTAGCATTGGATTTTTTGGAAGGGATTCTACTAATGAACCAAGGCCCCATAAATAATTGGAGATCCTCTTTCTTCCCTCTATCTGACCATCCCAGAATAGCTTCTTTAATAACTGAACATAGCATCCTCTACTGCCTTGAACTGGCTAAATATTATGATGACCAAACCGAGAAAAATGTGGACAAGGAAATTCATGTTTTGCTCCAAGGACTAGCCTATATCCCTGGAttttattatgagaaaaatgTCTCATACGTTGAGTTCTTGAATAGAGTCCGAAGTGGAGAGTTGAAGCTTCAGTCACAAGGACTGTGGAATGTTCCTCACCCATGGCTTAATTTGTTtataccaaaatctcaaatcttCGATTTTAATTCAGGGGTATTCAAAGatataattcttaaaagaaACATCTCCGCTGGACCAATCTTGGTTTACCCCATGAATAGAAACAAGTAA 1311 0.4058 MAVNYPLSTYFILLLIITITRLISTVGKTEQWKAPLLPELDIDNISHKFHDDPETIQMASRDYGNMVHEFPAVVFRPSSIDDIVTLIKSSYNSFAPFNIAARGQGHSTHGQAMARDGVVVDMASLRKQTNGVAISVSKDPLIGHYADVGGEQLWIDVLHATLEHGLAPVSWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVHEMDVITGKGEFVTCSSQKNLELFHAVLGGLGQFGVIARARIALEPAPKRVKWVRLLYSDFSAFTKDQERLISINGRKQKTALALDFLEGILLMNQGPINNWRSSFFPLSDHPRIASLITEHSILYCLELAKYYDDQTEKNVDKEIHVLLQGLAYIPGFYYEKNVSYVEFLNRVRSGELKLQSQGLWNVPHPWLNLFIPKSQIFDFNSGVFKDIILKRNISAGPILVYPMNRNK 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0652 436 Gene3D - 122 251 IPR016169 -
Ssu6g0652 436 PANTHER GULONOLACTONE OXIDASE 16 436 - -
Ssu6g0652 436 Gene3D - 52 121 IPR016167 -
Ssu6g0652 436 ProSiteProfiles PCMH-type FAD-binding domain profile. 67 249 IPR016166 GO:0071949
Ssu6g0652 436 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 250 436 IPR015345 GO:0009690|GO:0019139|GO:0050660
Ssu6g0652 436 Pfam FAD binding domain 71 218 IPR006094 GO:0050660
Ssu6g0652 436 PANTHER CYTOKININ DEHYDROGENASE 3 16 436 - -
Ssu6g0652 436 SUPERFAMILY FAD-linked oxidases, C-terminal domain 250 436 IPR016164 GO:0003824|GO:0050660
Ssu6g0652 436 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 71 106 IPR006093 GO:0016491
Ssu6g0652 436 SUPERFAMILY FAD-binding/transporter-associated domain-like 47 248 IPR036318 GO:0050660
Ssu6g0652 436 Gene3D - 252 436 IPR016170 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0652 Ssu-Chr6 10128876 10131962 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0652 K00279 - gmx:100787676 811.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0652 6 10128876 10131962 Ssu6g0652 6 10128876 10131962 ECH
Ssu6g0652 6 10128876 10131962 Ssu1g1532 1 36308358 36312142 PCT