Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1532 ATGGTAGCAGAGAACTACCCTTTCCCCACATACTTCATCCTCCTGCTCATAACCATAACCCGCTTGATCTCCACAGTGGGCAAAACCGAGCAATGGAAGGCCCCGCTGCCTCCGGAACTCGCCTCCGCGGACGCCGTGCTCCCCAGACTCCGCGACGACACGGAGGCCCTCCAGGGGGCCTCCGGGGACTACGGCAACCTCGTCCGCGACGTCCCATTGGCGGTGTTCCACCCGGCCTCGGCGGCCGACATGGCGAGGCTGATAAAACTGTCGCACGACAGCTCCGTCCCTTTCAGCGTAGCCGCGAGGGGGCAAGGGCACTCCACGCGCGGACAGGCGATGGCACGTGACGGGGTGGTGGTGGACATGGCCGGGTTCAGAGAGAGGGGGAATGGGGTCGGGATAAGGGTGAGTGTGGACCCCTCGGTTGGTTACCATGCTGATGTTGGAGGGGAGCAACTGTGGATCGATGTGTTGCACGACACGCTGGAGCACGGACTTGCACCTGTGTCTTGGACTGATTATTTGTACTTGACGGTGGGAGGGACGCTCTCCAATGCTGGCATCAGCGGCCAGACATTCCGCTATGGACCTCAAATCTCCAGTGTTCGTGAAATGGATGTCGTCACTGgAAAGGGCGAATTTGTGACATGCTCTTCGCAGACGAATTCGGAGTTATTTCACGCGGTTCTTGGAGGTTTAGGACAATTTGGAATTATAACAAGAGCAAGAATCGCTCTTGCGCCAGCTCCGAAGAGGGTTAAATGGGTCAGACTTTTGTACAATGACTTTTCTGCTTTTACCAAAGACCAAGAACAGTTAATCTCAATCACTGGAAGGAAACAAAATATTGCACTGGATTATTTGGAAGGATTGCTGCTAATGCACCAAGGACCCATAAATAATTGGAGATCTTCTTTCTTCCCTTTAGCCGACCATGCCCGAATAATTTCGCTAGTAACTAAACACAGCGTCCTCTATTGCCTAGAAGTTGCCAAATATTATGACGGCCAAAATGAAAACAGTGTAGACATGgAACTCCAAGTTTTACTCCAAGGACTGAGTTATATCCCtggattttattatgaaaaagatGTCTCATATGTTGAGTTCTTGAATAGAGTCCGAAGTGGAGAGCTGAAGCTACAGTCACAAGGACTGTGGGATGTTCCTCATCCGTGGCTTAATTTGTTTATACCGAAATCTCAAATCATGGATTTTGACTCAGGCATATTCAAGAATATCATCCTTAAACGAAACATCACCACAGGACCTGTCTTGGTTTACCCCATGAATAGAAACAAGTGGGACAATAGGATGTCAGCATCAATACCAGACGAGGATATCTTCTACACAGTTGGATTTTTGCATTCAAGTGGGTTTGATAATTGGAAGGCCTATGATgctcaaaataaagaaattttgcaattttgtaaTGATGCTGGGATCAAGGTTAAGCAATATCTTCCCCACTACCGCACACAAGAAGACTGGACAAACCATTTTGGCCCTAAATGGAGGACTTTTGTAGAAAGAAAACATCAGTTTGATCCAAGAATGATTCTATCACCGGGACAAAAAATCTTTAACAATTAA 1596 0.4731 MVAENYPFPTYFILLLITITRLISTVGKTEQWKAPLPPELASADAVLPRLRDDTEALQGASGDYGNLVRDVPLAVFHPASAADMARLIKLSHDSSVPFSVAARGQGHSTRGQAMARDGVVVDMAGFRERGNGVGIRVSVDPSVGYHADVGGEQLWIDVLHDTLEHGLAPVSWTDYLYLTVGGTLSNAGISGQTFRYGPQISSVREMDVVTGKGEFVTCSSQTNSELFHAVLGGLGQFGIITRARIALAPAPKRVKWVRLLYNDFSAFTKDQEQLISITGRKQNIALDYLEGLLLMHQGPINNWRSSFFPLADHARIISLVTKHSVLYCLEVAKYYDGQNENSVDMELQVLLQGLSYIPGFYYEKDVSYVEFLNRVRSGELKLQSQGLWDVPHPWLNLFIPKSQIMDFDSGIFKNIILKRNITTGPVLVYPMNRNKWDNRMSASIPDEDIFYTVGFLHSSGFDNWKAYDAQNKEILQFCNDAGIKVKQYLPHYRTQEDWTNHFGPKWRTFVERKHQFDPRMILSPGQKIFNN 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1532 531 Gene3D - 53 529 IPR016167 -
Ssu1g1532 531 ProSiteProfiles PCMH-type FAD-binding domain profile. 68 250 IPR016166 GO:0071949
Ssu1g1532 531 Gene3D - 123 252 IPR016169 -
Ssu1g1532 531 SUPERFAMILY FAD-binding/transporter-associated domain-like 51 249 IPR036318 GO:0050660
Ssu1g1532 531 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 251 529 IPR015345 GO:0009690|GO:0019139|GO:0050660
Ssu1g1532 531 Gene3D - 253 488 IPR016170 -
Ssu1g1532 531 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 72 107 IPR006093 GO:0016491
Ssu1g1532 531 SUPERFAMILY FAD-linked oxidases, C-terminal domain 251 530 IPR016164 GO:0003824|GO:0050660
Ssu1g1532 531 PANTHER CYTOKININ DEHYDROGENASE 1, FAD AND CYTOKININ-BINDING PROTEIN 12 530 - -
Ssu1g1532 531 Pfam FAD binding domain 72 219 IPR006094 GO:0050660
Ssu1g1532 531 PANTHER GULONOLACTONE OXIDASE 12 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1532 Ssu-Chr1 36308358 36312142 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1532 K00279 - gmx:100804431 975.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0652 6 10128876 10131962 Ssu1g1532 1 36308358 36312142 PCT