Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0616 ATGAGGCCGGATTCTGGGGAGATTGATGATATAGATAATATCAGTGAGCATACTTCCAAACTTCTTGCTGCTCATCATGCTGACTCGTTTGACTTGATTCGTGGGAGTTCAAAGGGAGACAGGAAACGAGGCAAAAGCTCTGGCAGGAAATGTGGTTTGTTGGGAAACAATTTCACAGTAGCTCTAATGGTGCAACTTCGTGATCCTCTGAGAAACTATGAGCCTGTTGGAACACCAATGCTTGCTCTTATACAAGTCGAGAGAGTGTTTGTCCCACCAAAGCAAAAGATTTATAGGCGTGCGTCTGAGGTGGGGagcaataatgatgaggatgaTGAGCGTGAAATAGTATCCAAGGTGGAGATGAAGGCcaacaaagaagagaaaagttCTGAAGAGGAGGCTATTCCTCAGTTCAGAATTACAGAAGTACATGTTGCTGGTCTGAAGACCGACCCTGAGCCTCACAAAAAGAAGGTTTGGGGCACTTCAAGACAACAACATTCTGGTTCCCGTTGGTTGATTGCAAATGGAATGGGGAAGAGCAATAAGAATCCATTTATGAAGTCAAAGTCCACAAATGTGCAACCGGGTGATGCATTGTGGAGCATATCATCTCGTTTTTATGGTACTGGAACAAGATGGAAGGAATTGGTAGAACTGAATCCACATATAAGAAATCCCAATATCATTATCCCGAATGAAACTATAAGAGTACGTTGA 723 0.4122 MRPDSGEIDDIDNISEHTSKLLAAHHADSFDLIRGSSKGDRKRGKSSGRKCGLLGNNFTVALMVQLRDPLRNYEPVGTPMLALIQVERVFVPPKQKIYRRASEVGSNNDEDDEREIVSKVEMKANKEEKSSEEEAIPQFRITEVHVAGLKTDPEPHKKKVWGTSRQQHSGSRWLIANGMGKSNKNPFMKSKSTNVQPGDALWSISSRFYGTGTRWKELVELNPHIRNPNIIIPNETIRVR 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0616 240 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 1 239 - -
Ssu6g0616 240 CDD LysM 195 239 IPR018392 -
Ssu6g0616 240 ProSiteProfiles LysM domain profile. 191 239 IPR018392 -
Ssu6g0616 240 SUPERFAMILY LysM domain 193 239 IPR036779 -
Ssu6g0616 240 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 1 239 IPR039614 -
Ssu6g0616 240 SMART LysM_2 192 240 IPR018392 -
Ssu6g0616 240 Pfam LysM domain 195 239 IPR018392 -
Ssu6g0616 240 Gene3D LysM domain 186 240 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0616 Ssu-Chr6 9674594 9675316 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0616 - - lja:Lj4g3v2179220.1 327.405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0616 6 9674594 9675316 Ssu1g1563 1 36988676 36990730 PCT