Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1563 ATGACAAAGTCACATAGCTTGGATGATGTTACAGAATCAGTTGCCAGTGAATTTTTAAGCATGTTAGGCTTAGACCATAGTCCAATGGGCTTGAGTGGTGAAAGCGAGCCTGAGTCTCCAAGAGAGCAACTTTTAAGACAATTTGAGAAGGAAGCTCTGGATGGGGGCTTCTCCTCTTTGTTTGATTTTGACATGAACTATGATAATGAAGTAGATGGTGGATATGATGCTTCTGCTGCATCTGAGCAGTGGAACTTTTCCGAAGGTGTTAAGTCATCATCCTTCTTGCAAGATCTGCAGGAGGAGCATCTAGTTGAGTCTCAGGATGTGAGGAGCAAACAGAGGGCTCAGATGCTAGAAGACTTGGAAACAGAAGCCTTGATGCGTGAATGGGGTTTGAATGAGCAGGCTTTTCATCATTCTCCACCAAAAGATTGTGCTGGTTTTGGAAGTCCAATTCATTTACCACCTGAAGAGCCTCCCACATTGCCTCCTCTTGATGAGGGGTTGGGCCCTTGTCTTCAGACAAAAGATGGGGGGTTTCTACGGTCTATGAATCCCTCACTTTTCAAGAATTCTAAAAGTGGTGGGAGCTTAATCATGCAGGTATCCAACCCTGTTGTGGTACCTGCAGAAATGGGTTCTGGGATAATGGAGGTCATGCAGTGTTTGGCTTCAGTGGGAATTGAAAAACTCTCAATGCAGGCAAAGGAGTTAATGCCTCTGGAAGATATCACAGGGAAGACAATGCAACAAATAGCATGGGAAGCTATGCCTGTCTTAGAAGGAGCAGAAAGGCAATGCCATTTGCAGCATGATCCAATAACAGGGCGAGACAGTGCTTGTGTGCAAAGGGACTTGAAAGGAATGCCGTCTGGACTAAAGTCTGGTAAGTTTAGTTCAAATTCAGTGGCCAACCAAACAAGCTCAGAGTTTGTTTCATTAGAAGACCTTGCTCCATTGGCTATGGATAAAATTGAAGCACTTTCAATGGAGGGTTTGAGAATACAATCTGGGATGTCAGATGAGGAAGCACCATCAAACATTGTTGCTCAGTCCATTGGGGATATTTCGGCTCTCCAGGGCAAGGGGGTTGATATTAGTGGGTCCCTTGGCCTGGATGGAGCTGCTGGTTTGCAGTTGATGGATGTAAAAGACGGCGGTGATGGTGCTGATGGGATAATGAGCCTGTCATTAACTCTTGATGAATGGATGAGGCTGGATTCAGGTGAGATTGATGATATAGATAATATCAGTGAGCATACTTCCAAACTTCTTGCAGCTCATCATGCCAACTCTTTTGACTTCATTCGTGGGAGCTCAAAGGGAGAGAGGAGACGAGGCAAAAGCAGAAGATGTGGTTTGCTAGGAAACAATTTCACGGTAGCATTAATGGTGCAACTCCGTGACCCTCTGAGAAACTATGAGCCGGTTGGAACACCAATGCTTGCTCTTATACAAGTTGAGAGAGAGTTCATGCTCCCAAAGCAAAAAATTTACAGTACTGTATCCGAGATAAGGAAAAACAATGATGACGATGATGAGAGCGAAATAGTAGCAAAGGTGGAGATGAAGGACACcaagaaagaggagaaaagttCTGAAGAGGAAGAGGGCATTCCTCAGTTCAGAATCACTGAAGTCCATGTAGCAGGTCTGAAGCCTGAGCCACAGAAAAAGAAGCTTTGGGGCACTTCAACCCAGCAACAGTCTGGTTCTCGCTGGTTGCTTGCTAATGGAATGGGGAAGAGCAATAATAAGCTTTCACTCATGAAATCAAAGGCTGCATCTAAATCTAATGCTCCAGTTACCACAAAGGTGCAACCTGGTGACACCTTGTGGAGCATATCATCTCGTATTTATGGCACTCGAGGAAAATGGAAGGAGTTGGCAGCACTAAATCCACATATAAGAAATCCCAATGTCATTATACCAAGTGACACTATAAGACTTAGTTGA 1959 0.441 MTKSHSLDDVTESVASEFLSMLGLDHSPMGLSGESEPESPREQLLRQFEKEALDGGFSSLFDFDMNYDNEVDGGYDASAASEQWNFSEGVKSSSFLQDLQEEHLVESQDVRSKQRAQMLEDLETEALMREWGLNEQAFHHSPPKDCAGFGSPIHLPPEEPPTLPPLDEGLGPCLQTKDGGFLRSMNPSLFKNSKSGGSLIMQVSNPVVVPAEMGSGIMEVMQCLASVGIEKLSMQAKELMPLEDITGKTMQQIAWEAMPVLEGAERQCHLQHDPITGRDSACVQRDLKGMPSGLKSGKFSSNSVANQTSSEFVSLEDLAPLAMDKIEALSMEGLRIQSGMSDEEAPSNIVAQSIGDISALQGKGVDISGSLGLDGAAGLQLMDVKDGGDGADGIMSLSLTLDEWMRLDSGEIDDIDNISEHTSKLLAAHHANSFDFIRGSSKGERRRGKSRRCGLLGNNFTVALMVQLRDPLRNYEPVGTPMLALIQVEREFMLPKQKIYSTVSEIRKNNDDDDESEIVAKVEMKDTKKEEKSSEEEEGIPQFRITEVHVAGLKPEPQKKKLWGTSTQQQSGSRWLLANGMGKSNNKLSLMKSKAASKSNAPVTTKVQPGDTLWSISSRIYGTRGKWKELAALNPHIRNPNVIIPSDTIRLS 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1563 652 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 3 651 - -
Ssu1g1563 652 CDD LysM 606 651 IPR018392 -
Ssu1g1563 652 ProSiteProfiles LysM domain profile. 603 651 IPR018392 -
Ssu1g1563 652 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 3 651 IPR039614 -
Ssu1g1563 652 Pfam LysM domain 606 651 IPR018392 -
Ssu1g1563 652 SUPERFAMILY LysM domain 603 651 IPR036779 -
Ssu1g1563 652 SMART LysM_2 604 652 IPR018392 -
Ssu1g1563 652 Gene3D LysM domain 593 652 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1563 Ssu-Chr1 36988676 36990730 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1563 - - gmx:100815106 1097.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1563 1 36988676 36990730 Ssu1g1563 1 36988676 36990730 ECH
Ssu6g0616 6 9674594 9675316 Ssu1g1563 1 36988676 36990730 PCT