Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0608 ATGACAAAAGATCTTGTTAGAACAAGGCATCAGATTGAAAAGTTTTATAAGCTCAAATCACAGCTCCAGGGTGTATCCCTCAGAATTCAAACTTTGAAATCAACACAAGCAATGGGTGAGGCCATGAAAGGTGTGACTAAGGCAATGGGTCAGATGAATAGGCAGATGAACTTGCCATCTTTGCAGAAAATCTTGCAAGAATTTGAGGGAGAGAATGAGAAGATGGAGTTGATTACAGAGGTGATGGGAGATGCAATAGATGATGCTTTGGAAGGggatgaggaagaagaagaaacagaaGAACTAGTGAATCAGGTTCTTGATGAGATTGGAATTGACATAAACCAAGAGCTTTTGAATGCACCATCAACGGCTGTTGCTGCCCCAGCTGCAAAGACTAAGGTGCCCCAAGTTGAAACTGCTGGGAATGATGATGCCGGTATAGATAGTGATTTACAGGCAAGTGTAAGTAATGAGCTGTACAATTCAGGATTATGA 498 0.3956 MTKDLVRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKILQEFEGENEKMELITEVMGDAIDDALEGDEEEEETEELVNQVLDEIGIDINQELLNAPSTAVAAPAAKTKVPQVETAGNDDAGIDSDLQASVSNELYNSGL 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0608 165 Gene3D - 1 119 - -
Ssu6g0608 165 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2 HOMOLOG 1-LIKE 1 158 - -
Ssu6g0608 165 Pfam Snf7 3 125 IPR005024 GO:0007034
Ssu6g0608 165 PANTHER CHARGED MULTIVESICULAR BODY PROTEIN 1 158 IPR005024 GO:0007034
Ssu6g0608 165 MobiDBLite consensus disorder prediction 130 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0608 Ssu-Chr6 9593176 9594084 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0608 K12191 - gmx:100526885 236.498
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0608 6 9593176 9594084 Ssu6g0608 6 9593176 9594084 ECH
Ssu6g0608 6 9593176 9594084 Ssu1g1567 1 37091449 37101875 PCT