Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1567 ATGAGTTTCATCTTCGGAAAGAGAAAAACACCCGCAGAGCTTCTGCGGGAAAATAAGAGGATGCTGGACAAATCAATTAGAGAAATTGAGCGCGAGCGGCAAGGTTTGCAAGCACAAGAgaagaaattgattttggagataaagaaaagtgCCAAACAGGGTCAGATGGGAGCTGTTAGAGTTATGGCAAAAGATCTAGTTAGAACAAGGCATCAAGTTGAGAagttttataagctaaaatctcAGCTCCAAGGTGTATCACTCAGAATTCAGACTTTGAAGTCAACACAAGCAATGGGTGAGGCTATGAAAGGCGTGACAAAGGCCATGGGGCAAATGAATAGGCAGATGAACTTGCCATCTTTGCAGAAAATCATGCAAGAATTTGAGAGGCAGAATGAGAAGATGGAATTGACATCTGAGATGATGGGAGATGCAATAGATGATGCTTTggaaggagaagaagatgaagaagaaactgAAGATCTAGTGAACCAAGTTCTTGATGAGATTGGAATTGACATTAACCAAGAGCTTGTAAATGCTCCATCATCAGCTGTTGCTGCCCCAGCTGCAAAGACAAAGGTGCCTCAAGTTGAAACTACTGGGAATGATGATAGCGGGATAGATAGTGATTTACAGGCTAGGTTGGACAATCTGAGAAAAATGTAG 672 0.378 MSFIFGKRKTPAELLRENKRMLDKSIREIERERQGLQAQEKKLILEIKKSAKQGQMGAVRVMAKDLVRTRHQVEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMELTSEMMGDAIDDALEGEEDEEETEDLVNQVLDEIGIDINQELVNAPSSAVAAPAAKTKVPQVETTGNDDSGIDSDLQARLDNLRKM 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1567 223 MobiDBLite consensus disorder prediction 184 223 - -
Ssu1g1567 223 PANTHER CHARGED MULTIVESICULAR BODY PROTEIN 1 223 IPR005024 GO:0007034
Ssu1g1567 223 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2 HOMOLOG 1-LIKE 1 223 - -
Ssu1g1567 223 Coils Coil 12 46 - -
Ssu1g1567 223 Pfam Snf7 17 186 IPR005024 GO:0007034
Ssu1g1567 223 Gene3D - 6 181 - -
Ssu1g1567 223 Coils Coil 119 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1567 Ssu-Chr1 37091449 37101875 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1567 K12191 - gmx:100526885 376.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1567 1 37091449 37101875 Ssu1g1567 1 37091449 37101875 ECH
Ssu6g0608 6 9593176 9594084 Ssu1g1567 1 37091449 37101875 PCT