Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0606 ATGGCTTCAACTTCAGCAGTTTCTATGGCTGTGCCACTAACTTACGCCAGCCAGAAGAGGGTGGTGCCCAGCTCTGAGGCATTCTTTAAGGCACCATTGCCTCTGCGGCCTTCAAAGGCTGTGGTAGCATCAAAACCCAATGGAAGGTTTCAAGTGAGGGCATCCGTGAAAGAGAAAGTTGTGACGGGTTTGACGGCAGCTGCATTGACTGCTTCAATGATGGTTCCGGATGTGGCTGAAGCTGCCGTTACACCTTCTCTGAAGAACTTCTTGCTCAGCATCGCGGCTGGTGGAGTTGTGGCTGCTGTACTTGTTGGTGCCGTGATTGGCGTTGCCAATTTCGATCCCGTCAAGCGAAGCTGA 363 0.5234 MASTSAVSMAVPLTYASQKRVVPSSEAFFKAPLPLRPSKAVVASKPNGRFQVRASVKEKVVTGLTAAALTASMMVPDVAEAAVTPSLKNFLLSIAAGGVVAAVLVGAVIGVANFDPVKRS 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0606 120 Pfam Photosystem II reaction centre X protein (PsbX) 83 120 IPR009518 GO:0009523|GO:0015979|GO:0016020
Ssu6g0606 120 Gene3D Single helix bin 82 120 - -
Ssu6g0606 120 PANTHER EXPRESSED PROTEIN 1 120 - -
Ssu6g0606 120 PANTHER OS07G0673550 PROTEIN 1 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0606 Ssu-Chr6 9586730 9587092 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0606 - - gmx:100306291 181.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0606 6 9586730 9587092 Ssu6g0606 6 9586730 9587092 ECH
Ssu6g0606 6 9586730 9587092 Ssu1g1577 1 37320591 37325118 PCT