Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0596 ATGACTGGAATGCCAAAGGAAGAAGGGTCAGCTAGTCCTAGTTGGGGTGCTTCATTTTTTATGCAGACAACAGAGGATGTGGCCAGAGCTGTTGCTGCTGCCGTTAACTCTCCAATGTCGTCAAAAGATGATAATAGTGGTAGCCAACTTCAAAGGCTGCAGTATCAAGTTACAAGAATGTTAAAAAGCTTTTCACACCCCCCTGATATTGAAAACACAAATTACAATCCTGAAATCCTTACTAGTCTGAAGCGTCAATGGGCGGCAAACTTTCAGTTGCAGTACATGGACCATAAGTCTTGGAAGGAGCCCTCGCGACTGTTTGAGAGCATGGTGGTTGTTGGACTTCATCCTAATTGTGATGTTCAGGCACTGCAAAGGCAATATGTTGATAGAAAGTTTGAAGGCTCTGGTAAATTGAGAAGTGCACTTGGTTATCAGAATCAATCTCGTGTAGAACCCAATATTGAACCTCAGGTCTTATTTGTTTACCCTCCAGAAAAACAGCTGCCTCTTAAATGCAAGGATCTTCTTTCTTTCTGCTTCCCTGGAGGCTTAGAGGTCCGTGCTGTTGAGAGAAGCCCTTCCATGAGTGAGTTGAATGAAATTCTTTTTGGGCAGGAACACCTTAAACAAAGGGATCTGTCATTTGTATTCAGGTTACAGGGTGCTGACAACTCAACACTTTATGGGTGTTGTGTCTTAGTTGAAGACCTAGTGCAAAAGCCCTCTGGATTACTTTCTCTGATTTCTGATAAGCAGCCTTCTTACTCATCTTTGAGACGACATATATTAACCACTCAGAGATGTTACTGCATTCTTTCAAGGCTTCCAGCTTTTGAATTGCACTTTGGTGTATTGAATAGCATCTTCACACAAGAAAGGTTAGAGCGGTTGACAAAAAGTGTTGgagatttaaatttagaatttgtcGAAGGTAACTATAAGGAAGAGAACCCAGAGGCCTACTCAGAGAGTGTTTTGGTGAGTGATGGACCAATAGAAGATAGACTTGGTAGAAATCCAATAATTTCTCAATCAAGAGTAAGAAAGTCGACACCTGAAAACATTGTGGATGATGGTCAACCAGAGCACCTAATGGTTGATGGGGAGCTGCAGACATATAaggagataatcaattatgacgATGTTTTGCCTACTGATCCTGTAACCAATAGGACAACAGCCAAAGAAGATTCTGGCCCTTCAAATTCTGAAGATAGCGATCAGTATGGAGATGCTTTTGCAACCAACAAACAATCAGAAGACAAACATTTACCTAATGCTATTTTGCCCCTTCTGCGCTATTGCCAGTATGAAAGCTCGGAATCTTCCTGCAGTTTTCAAGGCTCACCTTGTGAAGACAGAAGTTTTAGGAGTGATGTTGATGATAATGAGACAGAAGAAGCATCTTTCTCTGGCCAAGAGGATTTAAATGACTTAAATGGTATTCTTGAATGGGCTAAGGAAAATAACCATGGACCACTACAAATTATAAGCGAGTATTACCGTTTAAGTTACCCTGCCAGGGGCTCATCACTTACATTTCATCCTTTGGAGCACTTGCATCCCTTGGAATATCATAGATCAGCTGAGACAGTTCTACGTCTTGCTGGTTCAACAGTTGATTTGAAAACTTCTAGTACTGGTCTGGAATTAGCTGATGCACATAATGCTCTTCTGGTGGAAGAGGCTAATGCATTATCTGTATCGGCTGTAGCTTGTTTATGCGGTACATTGAGACTTGAAAATGTGTTAACATTCTTTGCAGGAGTTCTACTAGAGAAGCAGATAGTTGTTGTCTGTTCTAATTTGGGAATCCTATCTGCTTCAGTTTTATCAGTTATTCCACTAATCCAGCCTTATCGGTGGCAAAGCCTGCTAATGCCAGTTTTACCAAATGACATGCTTGAATTTTTAGATGCACCTGTCCCTTATGTTGTTGGTATCAAGAACAAGAACAGTGAAGTTCAGTCAAAGTTTACAAATGTTATTCTGGTTGATGCCAATAGAAACCAGGTGAAGTCATCAACAATACCACAACTGCCAAGACAGAAAGAACTAGTCTCTTCTTTACGTCCTTATCATGCAACTCTTGTAGGAGAAAGTTACTTGGGTAGGAGAAGACCAGTATATGAATGCACGGAAGTGCAGATTGAAGCTGCGAAGGGGTTCCTTTCGGTATTAAGATCTTACTTGGATTCTCTTTGTTATAACATCCGTTCTCACACAATCACCAATGTACAATCCAATGACGATAAGGTATCATTGCTTCTAAAGGAGAGTTTCATTGACTCATTCCCTTATCGTGATCGGCCTTTTATGAagATACAAATTGGAAGTGCAAGTTGGGGACATGATCACTATTCACTAAGCGTGGGTTGTGTGGACGCAAGACTGTGGTCCAAGTCCAAGATGTGGCAGTTCTGCTTGATTCAAAACCAGAATGCTACAGCAAAGATGCCGGGATTTGCCCTTCTGGCTGTTACATTAATGGAAACATTTGATGTCTGCTTGGGACCTTTTACTTCTTAA 2535 0.4059 MTGMPKEEGSASPSWGASFFMQTTEDVARAVAAAVNSPMSSKDDNSGSQLQRLQYQVTRMLKSFSHPPDIENTNYNPEILTSLKRQWAANFQLQYMDHKSWKEPSRLFESMVVVGLHPNCDVQALQRQYVDRKFEGSGKLRSALGYQNQSRVEPNIEPQVLFVYPPEKQLPLKCKDLLSFCFPGGLEVRAVERSPSMSELNEILFGQEHLKQRDLSFVFRLQGADNSTLYGCCVLVEDLVQKPSGLLSLISDKQPSYSSLRRHILTTQRCYCILSRLPAFELHFGVLNSIFTQERLERLTKSVGDLNLEFVEGNYKEENPEAYSESVLVSDGPIEDRLGRNPIISQSRVRKSTPENIVDDGQPEHLMVDGELQTYKEIINYDDVLPTDPVTNRTTAKEDSGPSNSEDSDQYGDAFATNKQSEDKHLPNAILPLLRYCQYESSESSCSFQGSPCEDRSFRSDVDDNETEEASFSGQEDLNDLNGILEWAKENNHGPLQIISEYYRLSYPARGSSLTFHPLEHLHPLEYHRSAETVLRLAGSTVDLKTSSTGLELADAHNALLVEEANALSVSAVACLCGTLRLENVLTFFAGVLLEKQIVVVCSNLGILSASVLSVIPLIQPYRWQSLLMPVLPNDMLEFLDAPVPYVVGIKNKNSEVQSKFTNVILVDANRNQVKSSTIPQLPRQKELVSSLRPYHATLVGESYLGRRRPVYECTEVQIEAAKGFLSVLRSYLDSLCYNIRSHTITNVQSNDDKVSLLLKESFIDSFPYRDRPFMKIQIGSASWGHDHYSLSVGCVDARLWSKSKMWQFCLIQNQNATAKMPGFALLAVTLMETFDVCLGPFTS 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0596 844 Pfam DENN (AEX-3) domain 564 670 IPR001194 -
Ssu6g0596 844 ProSiteProfiles Tripartite DENN domain profile. 142 806 IPR037516 -
Ssu6g0596 844 PANTHER SUPPRESSION OF TUMORIGENICITY 5 ST5 1 779 - -
Ssu6g0596 844 SMART uDENN_cls 104 237 IPR005113 -
Ssu6g0596 844 MobiDBLite consensus disorder prediction 383 423 - -
Ssu6g0596 844 SMART DENN_cls 266 672 IPR001194 -
Ssu6g0596 844 MobiDBLite consensus disorder prediction 387 423 - -
Ssu6g0596 844 MobiDBLite consensus disorder prediction 444 471 - -
Ssu6g0596 844 PANTHER DENN (AEX-3) DOMAIN PROTEIN 1 779 - -
Ssu6g0596 844 Pfam uDENN domain 158 235 IPR005113 -
Ssu6g0596 844 Gene3D - 568 734 IPR043153 -
Ssu6g0596 844 Gene3D - 95 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0596 Ssu-Chr6 9304053 9318175 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0596 - - gmx:100801645 1427.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0596 6 9304053 9318175 Ssu6g0596 6 9304053 9318175 ECH
Ssu6g0596 6 9304053 9318175 Ssu1g1587 1 37676941 37680297 PCT