Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1587 ATGGCTGGAATGACCAAGGAGGAAGAGTCGGGTAGTCCTAGTTGGGGTGCTTCATATTTTATGCAGACAACAGAGGATGTGGCTAGAGCTGTTGCTGCAGCTATGAATTCTCCAAGGCCATCTGTGATATATTCATCGAAAAATGATCATGGTGGCAGTCAACTTCAAAAGCTGCAGCATCAAgtttcaaaaatgataaaaggatTTTCTCACCCTCCTGAagttaaatatacaaattacaatCCAGAAATCTTGACAACTCAGAAGCGGCAATGGGCTGCAAACTTTCAGTTGCAGTACAtgGACCATAGGTCTTCGAAGGAGCCAACAAGGCTGTTTGAGAGCATGGTGGTTGTTGGACTTCATCCTAATTGTGATATTCAGGCACTGCAAAggcaatattttttaagaaagtcTGAAGGCCCTGGTAAATTGAGAAGTGCACTTGGTTATCAGAATCAATCCCGTGTAGAATCCAATCTTGAACCTCAGGTATTATTTGTTTACCCTCCAGAAAAACAGCTGCCTCTTAAAGACAAGGATCTTCTCTCTTTCTGCTTCCCTGGAGGCTTGGAGGTTAATGCTGTTGAGAGAACCCCTTCCATGAGTGAGTTGAATGAAATTCTTCTTGGGCAgGAACACCTTAAACAAAGGGATCTGTCTTTTGTATTTAGGTTACAGGGTGCTGATAATTTAACACTTTATGGGTGCTGTCTCTTAGTTGAAGAGTTAGTGCAAAAACCTTCTGGATTGCTCTCCCTCATTTCTAATAAGCAGTCAACTCACTCTTCTTTGAAACGCCATATTTTAATCACACAGAGATGTTACTGCATTCTCTCAAGGCTCCCATTTTTTGAATTGCACTTTGGTCTATTGAATAGGTAG 885 0.3944 MAGMTKEEESGSPSWGASYFMQTTEDVARAVAAAMNSPRPSVIYSSKNDHGGSQLQKLQHQVSKMIKGFSHPPEVKYTNYNPEILTTQKRQWAANFQLQYMDHRSSKEPTRLFESMVVVGLHPNCDIQALQRQYFLRKSEGPGKLRSALGYQNQSRVESNLEPQVLFVYPPEKQLPLKDKDLLSFCFPGGLEVNAVERTPSMSELNEILLGQEHLKQRDLSFVFRLQGADNLTLYGCCLLVEELVQKPSGLLSLISNKQSTHSSLKRHILITQRCYCILSRLPFFELHFGLLNR 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1587 294 Pfam uDENN domain 163 241 IPR005113 -
Ssu1g1587 294 PANTHER DENN (AEX-3) DOMAIN PROTEIN 1 293 - -
Ssu1g1587 294 Gene3D - 100 294 - -
Ssu1g1587 294 PANTHER SUPPRESSION OF TUMORIGENICITY 5 ST5 1 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1587 Ssu-Chr1 37676941 37680297 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1587 - - gmx:100782148 543.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1587 1 37676941 37680297 Ssu1g1587 1 37676941 37680297 ECH
Ssu6g0596 6 9304053 9318175 Ssu1g1587 1 37676941 37680297 PCT