Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0593 ATGCTCCCATTCAGCAAAACTACCCTAACACCCAAACCCCTCGATCCCACTCCCATTCGCAATCAACACCCACAaccacctcctcctccttcgATTGAATCGCTTCCCCCACTCATGACCACCACTCATCCAATTCCAAATTCTAACTCTCCACCCTCCCATCCTCTCGACCTCGAAATCGGGTTTGGGGGTTCCGACTTTGACATTAACGCGCTCATCGATGATTTTTTCGACCAACCTGCTCCCGAATTGCCCACTCTCGATAACCACGGATCCACCAGTGCCAGCAAAGACTCTCTCAAGAGAGGAATCGATAGCGCCGTTGATTATTTCGAAGCCGCCGTATCCATCAAGCGCGGTAGGATTAACAATGTTAGCGACGCGAGCTTTGAAATTGAAAACCCTATTCCTCTCTTCCAGGATCAAGGACACAGCGGTGACAATGGGAAACGCCCGGTGTttgaaatagattttttatcTACCGCTCTTCGCGAAGCTGAATTAGGCTTGGCGCAGAATTCAGACAATAACGCGAACCTTGACGTGGAACCTGATAATGTACCCTACCGTTCTAGTTCCAGAAGGAATCGGACCATGGAACGTTTCCGAGTGATAGCGAAGGAAAATGCCACTCGCTATGCTCGATTCACCTCGGACGTTGGAGATGAAGGCACGTCTCCTGCGGCTCAGGGAATTGACGATTGCGCAACTCCGTTTTCGATCGCTATGAAAGCGATCGTGGATCGAGCCGCGAAGAAGTGGGTTTCCAAGAGGAGCCAACAAGGGGAGAAGAGGTATTTGGTGCCCTCTTTGAAAGAACTGTGCCTTAAAATTCTTGCAGATAATGCTGATGCGATGGTTTCGCTCGAGAGTGTCCCAGATGAGCTGAGACACAAGCTTTGCTACCTGCTCTGTGACTCGAGAAAGATGAACGGTCACTTCCTTGATCTTCTTCTCAGTGGGGCTCCGACAGAGATTCGCCTGAAAGATTGCTCGTGGTTGACGGAGGAACAGTTTGCAAAGTCTTTTCAAATGTGTGACACTGGAAGATTGCAGGTGCTGCAACTTGACCAGTGTGGACGGTGTATACCTGATTATGCATTGCTTGGTACTTTGAGCCAGTCACCAAGGTGGTTGCCTAGATTAACTAGTCTGTCCCTCAGTGGTGCATGCCGTCTTTCAGATAAGGGGTTGCATGTGCTAGTTTCTTCTGCCCCAGTACTGAGATCGATTAATCTAAGCCAGTGCTCCCTTCTCTCATCTGCCAGTGTTAATATTTTGGCTGATTCATTGGGATCACTTCTGAAAGAGTTATATCTTGATGATTGCCAAATCATTGATGCTGCACAAATTGTGCCAGCGCTgaagaaacttgaacatttggAAGTGTTGTCATTGGCTGGCATTCAAACTGTCTCTGATGAGTTTATCAAGGATTACATCATTGCACGAGGTCACAACATGAAGGAGCTTGTTTTGAAGGACTGTAGAAAATTGACTGATGCATCAATAAAAGTCATTGCTGAACACTGTCCTGGGTTGTGTGCTCTTGATCTTATGCACTTGAACAAATTAACGGATTTATCCGTAGGATATCTTACAAATAGCTGTCTAGCACTTCATACATTGAAGCTCTGCCGCAATCCATTCAgTGATGAAGCAATTGCTGCATTTTTAGAGGTTACTGGAGAGTCCTTGAAAGAACTTTcacttaataatattaagaagGTTGGCCACCACACAACCTTATCACTTGCTAGGCATGCGAAAAGTTTGCATACTCTAGATCTATCTTGGTGCCGGAATTTGACGGACAATGAGTTGGGTTTGATTGTAGATAGCTGCTTCTCGCTGAGGTTGCTTAAACTTTTTGGATGCTCACTGGTAACAGATGTTTTTCTGAATGGACACTCAAACCCAGAGATTCAGATCCTTGGATTGAAGATGTCTCCTTTATTGCAAAATGTCAAAGTGCCTGATCCCTATCAACCTCCTTTGCGTTATTCATCAGTCTCAGTAGATTTGATATAG 2031 0.4451 MLPFSKTTLTPKPLDPTPIRNQHPQPPPPPSIESLPPLMTTTHPIPNSNSPPSHPLDLEIGFGGSDFDINALIDDFFDQPAPELPTLDNHGSTSASKDSLKRGIDSAVDYFEAAVSIKRGRINNVSDASFEIENPIPLFQDQGHSGDNGKRPVFEIDFLSTALREAELGLAQNSDNNANLDVEPDNVPYRSSSRRNRTMERFRVIAKENATRYARFTSDVGDEGTSPAAQGIDDCATPFSIAMKAIVDRAAKKWVSKRSQQGEKRYLVPSLKELCLKILADNADAMVSLESVPDELRHKLCYLLCDSRKMNGHFLDLLLSGAPTEIRLKDCSWLTEEQFAKSFQMCDTGRLQVLQLDQCGRCIPDYALLGTLSQSPRWLPRLTSLSLSGACRLSDKGLHVLVSSAPVLRSINLSQCSLLSSASVNILADSLGSLLKELYLDDCQIIDAAQIVPALKKLEHLEVLSLAGIQTVSDEFIKDYIIARGHNMKELVLKDCRKLTDASIKVIAEHCPGLCALDLMHLNKLTDLSVGYLTNSCLALHTLKLCRNPFSDEAIAAFLEVTGESLKELSLNNIKKVGHHTTLSLARHAKSLHTLDLSWCRNLTDNELGLIVDSCFSLRLLKLFGCSLVTDVFLNGHSNPEIQILGLKMSPLLQNVKVPDPYQPPLRYSSVSVDLI 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0593 676 MobiDBLite consensus disorder prediction 17 35 - -
Ssu6g0593 676 PANTHER F-BOX/LRR PROTEIN 180 670 - -
Ssu6g0593 676 SMART LRR_CC_2 537 561 IPR006553 -
Ssu6g0593 676 SMART LRR_CC_2 405 430 IPR006553 -
Ssu6g0593 676 SMART LRR_CC_2 589 614 IPR006553 -
Ssu6g0593 676 SMART LRR_CC_2 511 536 IPR006553 -
Ssu6g0593 676 SMART LRR_CC_2 485 510 IPR006553 -
Ssu6g0593 676 SMART LRR_CC_2 379 404 IPR006553 -
Ssu6g0593 676 SMART LRR_CC_2 563 588 IPR006553 -
Ssu6g0593 676 MobiDBLite consensus disorder prediction 175 194 - -
Ssu6g0593 676 MobiDBLite consensus disorder prediction 1 15 - -
Ssu6g0593 676 MobiDBLite consensus disorder prediction 1 54 - -
Ssu6g0593 676 Gene3D Ribonuclease Inhibitor 476 656 IPR032675 -
Ssu6g0593 676 PANTHER UNCHARACTERIZED 180 670 - -
Ssu6g0593 676 Gene3D Ribonuclease Inhibitor 280 475 IPR032675 -
Ssu6g0593 676 SUPERFAMILY RNI-like 327 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0593 Ssu-Chr6 9243950 9248022 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0593 K15082 - gmx:100798274 933.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0593 6 9243950 9248022 Ssu6g0593 6 9243950 9248022 ECH
Ssu6g0593 6 9243950 9248022 Ssu1g1593 1 37781187 37788928 PCT