Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1593 ATGAAAATCATCAGAGACCGAGGGACGAAATTGCAAAACGCTCAAAAGAGTTCGCAAGCGAACTTATGTCAGTCTATTTCGTGGGTTCCCAAAGCGAGGGAAGGGAATGTAGGTGTCGGTGTTTCGGTTCCGTCGTTGCAAGAGATGTGCCTTAAGATTCTTGTGAAGAACGTTGATGCGATTGCTTCGCTCGAGAGTGTGCCTGATGCGCTGAGGCACAGGCTTAGCCAGTTTCTCTGTGACTCGAGGAGAATTAACAACCACTTTTTCAAGCTTCTTGTGCGCGGAATTCCAACGGAGATTCGGTTGAGAGATTGCTCGTGGTTGACGGAGGAACAGTTTACCGAGTGTTTTCGAATATGCGCCACGGGGAATTTGGTGGTACTGCAACTTGACCAGTGTGGGCGCTGTTTGCCTGATTATGTGATAGTTGCTACTTTGGCACGGTCACCAAGGCATTTATCTAGATTAACTACTCTATCCCTTAGTGGTGCATGTCGACTTTCCGATGGAGGTTTGCGTGCACTTGTTTCTTCTGCTCCAGCACTTAGATCAATAAATCTCAGCCAGTGCTCCCTTCTCACATCtgctagtatatatattttggctGAATCATTAAGATCTCTTCTGAAAGAGTTGTACCTTGATGATTGCCAAGGCATTGATGCTGCACTAATTGTGCCAGCACTAATTGAGCTTGAACATTTAGAAGTGTTGTCAGTAGCTGGTATTCAAACTGTTTGTGATGAATTTGTCAAGAATTACATTGTTGCACGTGGGCAAAACATGAAAGAGCTTGTCTTGAAGGACTGTACAAACTTGACTGATTCATCAATCAAAGTCATTGTTGAGCACTGTCCAGGATTATGTGTGCTTGATCTTATGAACCTGAGCAAATTAACGGATTTATCCGTAGGATATCTTACAAATGGTTGTTGCACACTTCATACACTGAAGCTTTGCCGTAACCCATTCAGTGATGAAGCAGTCGCTGCATTTGTGGAGACCACTGGAGGGTCCTTAAAGGAGCTGTCACTTAATAACATTAAGAAGGTTGGTTACCACACAACCTTGTCACTTGCAAACCATGCAAAAAATTTGCACTCTCTAGATCTATCTTGGTGCAGAAATTTGACAGACAATGCATTGGGTTTGATTGTGGATAGCTGCTTGGCGCTGAGGTTACTTAAACTTTTTGGATGCACTcagGTAACAGATGCATTTCTTAATGGCCACTCAAACCTACAGATCCAGATAATTGGTTTGAAGATGTCTCCTGTGTTGCAGCATCTCAAAGTGCCAGATCCTCATCAAGGTGCTTTGAATTATTCATCAGTCTCCGTAGATATGGTATAA 1356 0.4277 MKIIRDRGTKLQNAQKSSQANLCQSISWVPKAREGNVGVGVSVPSLQEMCLKILVKNVDAIASLESVPDALRHRLSQFLCDSRRINNHFFKLLVRGIPTEIRLRDCSWLTEEQFTECFRICATGNLVVLQLDQCGRCLPDYVIVATLARSPRHLSRLTTLSLSGACRLSDGGLRALVSSAPALRSINLSQCSLLTSASIYILAESLRSLLKELYLDDCQGIDAALIVPALIELEHLEVLSVAGIQTVCDEFVKNYIVARGQNMKELVLKDCTNLTDSSIKVIVEHCPGLCVLDLMNLSKLTDLSVGYLTNGCCTLHTLKLCRNPFSDEAVAAFVETTGGSLKELSLNNIKKVGYHTTLSLANHAKNLHSLDLSWCRNLTDNALGLIVDSCLALRLLKLFGCTQVTDAFLNGHSNLQIQIIGLKMSPVLQHLKVPDPHQGALNYSSVSVDMV 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1593 451 PANTHER F-BOX/LRR PROTEIN 1 445 - -
Ssu1g1593 451 SMART LRR_CC_2 260 285 IPR006553 -
Ssu1g1593 451 SMART LRR_CC_2 154 179 IPR006553 -
Ssu1g1593 451 SMART LRR_CC_2 390 415 IPR006553 -
Ssu1g1593 451 SMART LRR_CC_2 286 311 IPR006553 -
Ssu1g1593 451 SMART LRR_CC_2 364 389 IPR006553 -
Ssu1g1593 451 SMART LRR_CC_2 180 205 IPR006553 -
Ssu1g1593 451 PANTHER UNCHARACTERIZED 1 445 - -
Ssu1g1593 451 SUPERFAMILY RNI-like 100 410 - -
Ssu1g1593 451 Pfam Leucine Rich repeat 154 176 IPR001611 GO:0005515
Ssu1g1593 451 Pfam Leucine Rich repeat 365 381 IPR001611 GO:0005515
Ssu1g1593 451 Gene3D Ribonuclease Inhibitor 255 433 IPR032675 -
Ssu1g1593 451 Gene3D Ribonuclease Inhibitor 25 254 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1593 Ssu-Chr1 37781187 37788928 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1593 K15082 - gmx:100808150 810.061
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1593 1 37781187 37788928 Ssu1g1593 1 37781187 37788928 ECH
Ssu6g0593 6 9243950 9248022 Ssu1g1593 1 37781187 37788928 PCT