Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0580 ATGTTCATCCGAAACAGGATGAAGGTAGGCTTTAATGGATTAAGGGGTAAAGAAATTTCGCTTATTTCCATTGTTCTCATGTCTGCAACTATCATTTTATGGTCATGGAAGAAAACACCTGGTCTTAGTACCTTTCTTCCTCCTCAAACACCACCACTGCAGCTGTCTTCAGATCATTTAGCTACTAGTCGTTCAGCCCAGGTGCTAGCACCAGATCCACGTTTGGGTGAAGATGGCTCATCGTTGGCAAAGAAAAAGACCACCAATGAACCAGAAGAACTACATCTCGAGGGAGCATCGCAGACGGTTCCTGCACAAAGCTCTTCTGGAAAGAACATGGCTGAAGATGCCTCATCGTTGGCAAAGAAAAAGACCACCAATGAGCCAGAAGAACTACAATTTAAGGAAGCATCGTGGACAGTTCCTGCACAAAGCTCTTCTGGAAACAACTTGGGTGAAAGTAATACCGGAACCATTTCATATACCAAACAAATTCCTTCAAGTGTGTCAGATGAAGAAGCAATACACGAAAGAATCTTGGAAGGTGGGAAAAACCATAGCATACAAACTTTTTCCAGCCCAACAACGTCTGGGGCTAAAAAGAATGAAGCTGAGGGGgagaaaagtttgaaacaaGAAGAACATAAGCATAGAAATGATTTTGTGACAAACTCTCCACAGGCAGAAATAAGCTCTGTAATCGGTGGAAAAGACAACAACAATTGGAATAATGCTACAGAAAGTAAAGTCTGTAATTATGCAAAAGGAAAGTGGGTCCCAGACAACAACCGGCCTCTGTATTCAGGCTTTGGTTGCAAACAGTGGCTCTCAGGGATGTGGGCTTGCCGCATGATGCAGCGTACTGATTTTGAGTATGAGAAGCTTCGATGGCAACCCAAGGATTGTCAAATGGAGGAATTTGAAGGTTCTAAATTCTTGAGAAGGATGCAAAACAAAACTCTAGCTTTTGTTGGAGACTCGTTGGGCCGGCAGCAGTTCCAGTCTTTAATGTGCATGATCACTGGTGGTGAGGAGAAACTTCATGTTGAAGATGTGGGAAGGGAGTATGGATTGGTTATAGCTGAGGGCTCTGCCCGTCCTAGTGGGTGGGCGTTCCGTTTCTCAAGCACTAATACTACCATCCTGTACTACTGGTCAGCAATTCTCTGTGATGTTGAACCTATTGATGTAAACAACCCAAACACGGACTATGCAATGCATCTTGATCGGCCACCAGCATTCTTGCGCCAATATCTCCACAGGTTCAATGTCCTGGTTCTCAACACGGGTCACCACTGGAATCGGGGAAAGCTCAATGCTAATCGATGGGTAATGCATGTTGGTGGTGTGCCAAATACTGATAGGAAGATAGCAGTGATTTGGGGTGCCAAGAATCTTACGATTCACAGTGTTGTTAGTTGGGTGAATTCACAGCTTCCAAAATATCCAGGTTTGAAGGTATTCTTTCGTTCCATCTCTCCTAGGCATTTTGTTGGTGGGGACTGGAACACAGGAGGCAGTTGCGACAACACCAAACCGATGTCCGTTGGAAAGGAAATATTGGAAGAGGAGTCCAGTGATCAAGGTGCTGCAAATGCAGTAAAGGGAACAGGGGTTAAGCTCTTGGACATAACAGCTCCTTCTCAGCTTAGGGATGAGGCTCATATATCGCGGTTCAGTATTACAGCAAAGCCTGGTGTGCAGGATTGTTTACACTGGTGTTTGCCAGGTGTTCCTGATACATGGAATGAATTACTCTTTGCTCAAATCTAG 1773 0.4428 MFIRNRMKVGFNGLRGKEISLISIVLMSATIILWSWKKTPGLSTFLPPQTPPLQLSSDHLATSRSAQVLAPDPRLGEDGSSLAKKKTTNEPEELHLEGASQTVPAQSSSGKNMAEDASSLAKKKTTNEPEELQFKEASWTVPAQSSSGNNLGESNTGTISYTKQIPSSVSDEEAIHERILEGGKNHSIQTFSSPTTSGAKKNEAEGEKSLKQEEHKHRNDFVTNSPQAEISSVIGGKDNNNWNNATESKVCNYAKGKWVPDNNRPLYSGFGCKQWLSGMWACRMMQRTDFEYEKLRWQPKDCQMEEFEGSKFLRRMQNKTLAFVGDSLGRQQFQSLMCMITGGEEKLHVEDVGREYGLVIAEGSARPSGWAFRFSSTNTTILYYWSAILCDVEPIDVNNPNTDYAMHLDRPPAFLRQYLHRFNVLVLNTGHHWNRGKLNANRWVMHVGGVPNTDRKIAVIWGAKNLTIHSVVSWVNSQLPKYPGLKVFFRSISPRHFVGGDWNTGGSCDNTKPMSVGKEILEEESSDQGAANAVKGTGVKLLDITAPSQLRDEAHISRFSITAKPGVQDCLHWCLPGVPDTWNELLFAQI 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0580 590 MobiDBLite consensus disorder prediction 185 200 - -
Ssu6g0580 590 MobiDBLite consensus disorder prediction 117 131 - -
Ssu6g0580 590 MobiDBLite consensus disorder prediction 78 93 - -
Ssu6g0580 590 MobiDBLite consensus disorder prediction 100 115 - -
Ssu6g0580 590 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 14 10 590 - -
Ssu6g0580 590 MobiDBLite consensus disorder prediction 201 218 - -
Ssu6g0580 590 MobiDBLite consensus disorder prediction 138 169 - -
Ssu6g0580 590 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 306 588 IPR026057 GO:0016740
Ssu6g0580 590 Pfam PMR5 N terminal Domain 250 303 IPR025846 -
Ssu6g0580 590 MobiDBLite consensus disorder prediction 56 218 - -
Ssu6g0580 590 PANTHER N-ACETYLNEURAMINATE 9-O-ACETYLTRANSFERASE 10 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0580 Ssu-Chr6 9007203 9011614 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0580 - - gmx:100796855 1052.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0580 6 9007203 9011614 Ssu6g0580 6 9007203 9011614 ECH
Ssu6g0580 6 9007203 9011614 Ssu1g1611 1 38227183 38227623 PCT