Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0572 ATGATGGTGGAGACCTCGACGACGCTGGGGCGGTTCCACCACCAAAGGCTCGACCTTCGCCGCTGGGTCCCCGCGTTCCTCACCTCGCACAAGACCCTCTTCACCGTTCTCTGGATCGCCGCATTCGCCTCGGTTTTCCTGTGGCAGAGGAACATAGTCGGCGGGTTCCTCGTCTTCGGCGGGGCTCCGGCGAGGCCCCTGCCGAAGCTCCGGCCCGCGGCATTCAATTTGACGGATTTCGGAGGGGTCGGCGACGGCGTTACTCTCAACACCGAGGCGTTCGAGAGGGCCGTTTCCGCGATTTCTAGGTTTGGGAAGAAAGGCGGTGCGCAGTTGAATGTGCCTCCCGGACGGTGGCTAACGGCGCCGTTTAATCTCACCAGCCACATGACTCTGTTTTTAGCTGAAGATGCTGTTATACTAGGCGTTGATGATGAAAAATACTGGCCACTGATGCCTCCACTGCCTTCATATGGGTATGGGAGGGAGCATCCTGGACCTCGATATGGAAGTTTAATTCATGGTCAAAATCTTAAAGATGTTGTGATAACAGGGCACAACGGTACCATAAATGGACAGGGACAAACATGGTGGAAAAAATATCGCCAGAAGCGCCTCAACCACACAAGGGGGCCACTTGTTCAGATCATGTGGTCTAGTAACATAGTGATCACTAATATTACTTTGCGTGACTCTCCTTTTTGGACGCTTCATCCATATGACTGCAAAAACATTACAATAAAAGGTGTTACAATATTGGCTCCTGTGTTTGAAGCTCCAAATACTGATGGCATAGATCCTGACTCTTGTGAGGACATGTTGATAGAGGACTGTTACATAAGTGTGGGAGATGATGCAATTGCAATAAAAAGTGGCTGGGATCAGTATGGAATTGCTTATGGAAAGCCTTCCATGAATATAATGATCCGAAACCTTGTTGTTCGTTCTATGGTCAGTGCTGGCGTCTCAATTGGCAGTGAGATGTCTGGCGGGGTATCCAATGTCACGGTGGAGAATCTTCTTGTATGGGATTCTAGGCGTGCTGTGAGGATCAAGACCGCCCCTGGACGAGGAGGATATGTGCGCCAAATAACTTATCGGAATCTAACATTTGAGAATGTACGTGTTGGAATTGTTATGAAGACAGATTACAATGAACACCCTGATGATGGGTATGACCCTACGGCACTCCCAATTCTCAGAGACATAAGCTTTACCACAGTCCATGGCCAAGGAGTTCGCGTGCCAGTACGTATACACGGTAGTGAAGAGATTCCTGTGAGAAATGTGACTTTTAAAGACATGTCAGTTGGCCTAACCTACAAAAAGAAGCATATCTTTCAGTGTGCCTTTGTTGAAGGCCGCGTAATAGGGACCATCTTTCCTGCTCCCTGTGAGAACCTTGATCGGTACAATGAGCAAGGACAGCTGGTTAAGCATTCCGCGTCCCAGAATGTAACAGATATAGATTATGATTTTTGA 1482 0.4879 MMVETSTTLGRFHHQRLDLRRWVPAFLTSHKTLFTVLWIAAFASVFLWQRNIVGGFLVFGGAPARPLPKLRPAAFNLTDFGGVGDGVTLNTEAFERAVSAISRFGKKGGAQLNVPPGRWLTAPFNLTSHMTLFLAEDAVILGVDDEKYWPLMPPLPSYGYGREHPGPRYGSLIHGQNLKDVVITGHNGTINGQGQTWWKKYRQKRLNHTRGPLVQIMWSSNIVITNITLRDSPFWTLHPYDCKNITIKGVTILAPVFEAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGIAYGKPSMNIMIRNLVVRSMVSAGVSIGSEMSGGVSNVTVENLLVWDSRRAVRIKTAPGRGGYVRQITYRNLTFENVRVGIVMKTDYNEHPDDGYDPTALPILRDISFTTVHGQGVRVPVRIHGSEEIPVRNVTFKDMSVGLTYKKKHIFQCAFVEGRVIGTIFPAPCENLDRYNEQGQLVKHSASQNVTDIDYDF 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0572 493 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 23 491 - -
Ssu6g0572 493 SUPERFAMILY Pectin lyase-like 66 466 IPR011050 -
Ssu6g0572 493 SMART pbh1 304 326 IPR006626 -
Ssu6g0572 493 SMART pbh1 361 382 IPR006626 -
Ssu6g0572 493 SMART pbh1 242 269 IPR006626 -
Ssu6g0572 493 SMART pbh1 270 291 IPR006626 -
Ssu6g0572 493 SMART pbh1 332 353 IPR006626 -
Ssu6g0572 493 Pfam Glycosyl hydrolases family 28 170 452 IPR000743 GO:0004650|GO:0005975
Ssu6g0572 493 PANTHER PECTIN LYASE-RELATED 23 491 - -
Ssu6g0572 493 Gene3D - 63 454 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0572 Ssu-Chr6 8899348 8906256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0572 11 492 Glycoside Hydrolase AT1G19170 75.960 0.0 784
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0572 - - gmx:100818529 964.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0572 6 8899348 8906256 Ssu6g0572 6 8899348 8906256 ECH
Ssu6g0572 6 8899348 8906256 Ssu1g1621 1 38395515 38401019 PCT