Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1621 ATGGCGGAGAAAAACTCAGGGCCAGGCATCACAACACTCGGGTGGATCCAGCTCCACCCCAAAACGGCGCCGTTCGCCTCTCACAGGACCCTCTTCGCGTTCCTGTGGGTCGCGGCGCTGGCCTCTGTTTTCGCGTGGCAGAGGAACACGATCAGCGGGTTTCTGGCGCTGGGCGGTGTTCCGGCGAGGCTGCCGCCGAGGCTGCGGCCGGTGGTTTTCTGTTTGACGGAGTTTGGCGGGGTCGGTGACGGCGTTACCCTCAACACTGAGGCGTTTGAGAGAGCCGTTGGTGCTATCTCCGAGTTGGGGAATAAGGGCGGTGGCCAACTCAATGTGCCACCCGGGCGTTGGCTCACCGCACCCTTTAATCTCACCAGTCACATGACCCTTTTTCTTGCTCGAGATTCTGTCATACTTGCGATTCAGGATGAAAAGTATTGGCCACTGATGCCTGCATTGCCTTCATATGGGTATGGAAGGGAGCATCCTGGGCCTCGATATAGCAGTTTGATTCATGGTCAAAATCTCAGAGATGTTGTCATAACAGGCCATAATGGTACCATAAATGGACAGGGACAAACATGGTGGACAAAATATCGCCAGAAGCTTCTCAACCACACAAGGGGGCCACTTGTTCAGATACTGTGGTCTAGTAACATTGTGATCTCAAATATTACTTTGCGTGACTCTCCTTTTTGGACACTACATCCATATGACTGCCAAAATGTTACagtaaaaaatgttactatatTGGCTCCTGTATCCCACGCTCCAAACACCGATGGCATAGATCCTGATTCTTGTGAGGATATGTTGATAGAGGACTGTTACATAAGTGTAGGGGATGATGCAATTGCAATAAAAAGTGGCTGGGATCAATATGGAATTGCTTATGGCAGGCCTTCCAGGAATATAGTAATTCGAAACCTAGTTGTTCGCTCTAATGTCAGTGCTGGCATCTCAATAGGCAGTGAGATGTCTGGTGGGGTATCCAACGTCCTGGTGGAGAACATTCTTGTATGGGAATCAAGGCGTGCCATGAGAATCAAGACCGCACCCGGAAGAGGTGGATATGTGCGTCAAATAACTTACCGGAATCTGATGTTCAGAAATGTGCGTGTTGGAGTTGTTATCAAGACAGATTACAATCAACACCCTGGTGCTGGATATGATCCTACAGCACTTCCAATACTCAGAGACATAAGCTTCACCACTATCCGTGGCCAAGGAGTTCGTGTGCCGGTTCGAATTCAAGGTAGTGAAAAGATTCCAGTTAGAAATGTGACTTTCCAGGATATGAAGGTTGGGATAAGCTACAAGAAAAAGCATATCTTCCAGTGTGCCTTTGTCCAAGGTCAGGTAATAGGGACCATCGTTCCTGCTCCCTGTGACAACTTTGATCAGTACAATGAGCAAGGGCAGCTTGTTAAGCATGCGGCCTCCCAGAATGTAACAGATATAGATTATGAAATTTGA 1476 0.4837 MAEKNSGPGITTLGWIQLHPKTAPFASHRTLFAFLWVAALASVFAWQRNTISGFLALGGVPARLPPRLRPVVFCLTEFGGVGDGVTLNTEAFERAVGAISELGNKGGGQLNVPPGRWLTAPFNLTSHMTLFLARDSVILAIQDEKYWPLMPALPSYGYGREHPGPRYSSLIHGQNLRDVVITGHNGTINGQGQTWWTKYRQKLLNHTRGPLVQILWSSNIVISNITLRDSPFWTLHPYDCQNVTVKNVTILAPVSHAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGIAYGRPSRNIVIRNLVVRSNVSAGISIGSEMSGGVSNVLVENILVWESRRAMRIKTAPGRGGYVRQITYRNLMFRNVRVGVVIKTDYNQHPGAGYDPTALPILRDISFTTIRGQGVRVPVRIQGSEKIPVRNVTFQDMKVGISYKKKHIFQCAFVQGQVIGTIVPAPCDNFDQYNEQGQLVKHAASQNVTDIDYEI 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1621 491 Gene3D - 62 454 IPR012334 -
Ssu1g1621 491 PANTHER PECTIN LYASE-RELATED 21 489 - -
Ssu1g1621 491 SUPERFAMILY Pectin lyase-like 63 464 IPR011050 -
Ssu1g1621 491 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 21 489 - -
Ssu1g1621 491 Pfam Glycosyl hydrolases family 28 168 450 IPR000743 GO:0004650|GO:0005975
Ssu1g1621 491 SMART pbh1 240 267 IPR006626 -
Ssu1g1621 491 SMART pbh1 330 351 IPR006626 -
Ssu1g1621 491 SMART pbh1 420 441 IPR006626 -
Ssu1g1621 491 SMART pbh1 359 380 IPR006626 -
Ssu1g1621 491 SMART pbh1 302 324 IPR006626 -
Ssu1g1621 491 SMART pbh1 268 289 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1621 Ssu-Chr1 38395515 38401019 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1621 25 491 Glycoside Hydrolase AT3G42950 71.816 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1621 - - gmx:100800910 907.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0572 6 8899348 8906256 Ssu1g1621 1 38395515 38401019 PCT