Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0542 ATGGCATCGTCAGAGAATGAACCTTGTCACTCTCCTTCTGCCTCTGACCAAGCCCCTCCTCCTCCTTTCAATGTCTGTATGCAGAAATTTAGGCTATATGAGACTCGATCGAACTTTTACATGATAGGAAGGGACAAGAGCAGGACATATTGGAGAGTACTAAAGATTGACCGTCTTGATCCTTCTGAGCTAAATTTGCGTGAAGATTCCACCACATATACAGAAAGTGAATGTTCTGATCTTTTGAGACGGATACATGAGGGTAACAAGTCCACAGGTGGACTTAAATTTGTTACAACTTGTTATGGAATTGTGGGGTTCATCAAATTTTTGGGGCCTTACTACATGCTGCTTATCACAAAAAGAAGGCAAATTGGTGCAATCTGTGGTCATACAGTATATGCTGTCTCAAAGAGTGAAATGATTCCATTGCCAAATTCTTCAGTTCGGTCTAACATCAattctaaaaatgaaaacaggTACAAGAGGCTCCTATGCATGGTCGACCTTACAAAGGACTTTTTTTTCAGCTACTCTTACCACATCATGCGTAGTCTTCAAAGGAACATGTGTGATAATGAGACAGGCCATGTTCTTTATGAGACCATGTTTGTTTGGAATGAGTTCTTAACTCGAGGAATTAGGAATCACCTCCAGAATACTATTTGGACAGTTGCACTAGTGTATGGCTTTTTTAAACAGGAAACGCTTATGTTATCTGGACGGGAGTTCATACTTACGCTCATCGCAAGACGATCACGTCATTATGCTGGCACTAGGTATTTAAGGCGAGGAGTTAATGAGAAAGGCAGAGTAGCAAATGATGTTGAGACAGAACAAATAGTCTTTGAGGATGTTCAGGAAGGTCTTCCCATCCAAATAAGCTCTATCGTCCAGGACCGTGGTTCAATCCCTCTTTTCTGGTCACAGGAAACTTCAAAGCTAAATATTAAACCAGATATTATATTGTCAAAGAAGGATCAGAATTATCAAGCCACTAGACTTCACTTTGAAAACCTTGTGAAAAGATATGGGAATcccataattattttgaatttaataaagAACCATGAGAAGAAGCCTCGTGAGTCCATACTTCGTGCGGAGTTTGCTAACGCCATAGATTTCATTAATAAAGATTTATCTGAGGAGAACAGGCTTAGGTTCCTTCATTGGGATCTGCACAAACATTTTCAgagCAAATCTGCAAATGTCTTGCAGCTTCTCGGCAAAGTGGCTGCATATGCATTGACATTAACAGGTTTTTTCTATTGCCAAGCAACACCAACCTTGAGACCAGAAGAATGTCTAAAATGGCCGACTACAGACAATGTTGATAAGGGAACCTTTTCACTGACTAGACATGTCAATGATGACAACGAGGATGCTAATAGTTTAGAGAGGAAACCAAGTGAAAGAAACAATGATGCCAATGAAAATCATTCTGTCAAACCTCCCAGATTGCAGAGGGGGGTGCTCAGGACCAACTGCATAGACTGCTTGGATCGCACAAATGTTGCACAATATGCATATGGGTTGGCTGCTCTTGGCCACCAGCTCCATGCTCTGGGAGTTATTGACCACCCAAAAGTCGATCTTGATGATCCTGTAGCTGATGATTTGATGGGGTTTTATGAGCGGATGGGTGATACACTTGCTCATCAGTATGGTGGTTCTGCTGCACACAACAAGATTTTCTCTGAGAGGAGGGGCCAGTGGAGAGCTGCAACACAGTCTCAGGAGTTTTTTAGGACTCTTCAACGCTATTACAGCAATGCATACGTGGATGCTGTTAAACAGGATGCAATCAATGTATTCCTGGGGCATTTTCAGCCACAACAGGGTAAGCCTGCTCTATGGGAGTTGGGTTCAGATCAGCTCTATGATACAGGAAGACATGGAGATGATGATGCAAGGTCATTTTTCAAAAGATCCTTCTCAGATGGAAACATTCTTAATGAAAGTCCTACACCGATGTCAGCCGCAAAGGCCAAGCACGAAAAATTCCCAAGCCAAGGCTTACCAGACCGATCAGAAGAAGGAAGCAAGGGTCTTTGTGAGTCATCACCAGAAATATATACTACTGAGAGTGACGTCTCATTTTCAAGGTACACTCCCTCAATGCCTCGGAGACAGCTCTTTGGAGATATGCAAAGAGAGCACTTTGAAAGTGATCATATTAACTATTCTGATCATGGAGATTCCTTCAGCTGCTCCAACTTTGTTGACCTGGATTGGCTATCTTCTTCAGGAAATTCATGCGAAGAAGAGCCTTTCGAGAGGTCATCAATTACCAACTCTCCAATTGCTGGAGTTTCTTCAGAAAATGTTGTTAATGGAATAATGGTAGGAGAAACAACTGCCTCTGCCTCCACTAGTGATGGGGGGGCCTCCAGCCTAAAGGGAAGGGAGCAAACTGAATCTGAGTTATCCTACGGTAATGCACGGTCCAACACACCAGAGGAATTTCCAGATACTTTTGTACAATGGGTGACCTATGGACAGACACTTTGCCATTGA 2520 0.419 MASSENEPCHSPSASDQAPPPPFNVCMQKFRLYETRSNFYMIGRDKSRTYWRVLKIDRLDPSELNLREDSTTYTESECSDLLRRIHEGNKSTGGLKFVTTCYGIVGFIKFLGPYYMLLITKRRQIGAICGHTVYAVSKSEMIPLPNSSVRSNINSKNENRYKRLLCMVDLTKDFFFSYSYHIMRSLQRNMCDNETGHVLYETMFVWNEFLTRGIRNHLQNTIWTVALVYGFFKQETLMLSGREFILTLIARRSRHYAGTRYLRRGVNEKGRVANDVETEQIVFEDVQEGLPIQISSIVQDRGSIPLFWSQETSKLNIKPDIILSKKDQNYQATRLHFENLVKRYGNPIIILNLIKNHEKKPRESILRAEFANAIDFINKDLSEENRLRFLHWDLHKHFQSKSANVLQLLGKVAAYALTLTGFFYCQATPTLRPEECLKWPTTDNVDKGTFSLTRHVNDDNEDANSLERKPSERNNDANENHSVKPPRLQRGVLRTNCIDCLDRTNVAQYAYGLAALGHQLHALGVIDHPKVDLDDPVADDLMGFYERMGDTLAHQYGGSAAHNKIFSERRGQWRAATQSQEFFRTLQRYYSNAYVDAVKQDAINVFLGHFQPQQGKPALWELGSDQLYDTGRHGDDDARSFFKRSFSDGNILNESPTPMSAAKAKHEKFPSQGLPDRSEEGSKGLCESSPEIYTTESDVSFSRYTPSMPRRQLFGDMQREHFESDHINYSDHGDSFSCSNFVDLDWLSSSGNSCEEEPFERSSITNSPIAGVSSENVVNGIMVGETTASASTSDGGASSLKGREQTESELSYGNARSNTPEEFPDTFVQWVTYGQTLCH 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0542 839 PANTHER PHOSPHOINOSITIDE PHOSPHATASE SAC3-RELATED 17 839 - -
Ssu6g0542 839 MobiDBLite consensus disorder prediction 452 480 - -
Ssu6g0542 839 MobiDBLite consensus disorder prediction 669 684 - -
Ssu6g0542 839 Pfam SacI homology domain 102 398 IPR002013 GO:0016791
Ssu6g0542 839 PANTHER POLYPHOSPHOINOSITIDE PHOSPHATASE 17 839 IPR043573 GO:0043813|GO:0046856
Ssu6g0542 839 MobiDBLite consensus disorder prediction 452 486 - -
Ssu6g0542 839 MobiDBLite consensus disorder prediction 1 22 - -
Ssu6g0542 839 MobiDBLite consensus disorder prediction 787 820 - -
Ssu6g0542 839 MobiDBLite consensus disorder prediction 652 689 - -
Ssu6g0542 839 ProSiteProfiles Sac phosphatase domain profile. 165 558 IPR002013 GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0542 Ssu-Chr6 8360789 8371184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0542 27 839 Acyl Lipid Metabolism Gene Families AT3G43220 64.504 0.0 1029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0542 K22913 - gmx:100810079 1579.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0542 6 8360789 8371184 Ssu6g0542 6 8360789 8371184 ECH
Ssu6g0542 6 8360789 8371184 Ssu1g1647 1 39535770 39552009 PCT