Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1647 ATGGCGTCGTCGGAGAATGAACCTTCTTCTcactctcctcctcctcctcctgcGCATGCGTGTATGCACAAGTTCAGGCTCTATGAGACTCTATCGAACTTTTACATGATAGGAAGGGACAAGAGCAGGACCTATTGGAGAGTGTTAAAGGTTGACCGTCTAGATCCCTCTGAGCTGAATGTGCTTGAAGATTCCACCATATATACAGAAAGTGAATGTTCTGACCTGTTGAGGCGTATACACGAGGGGAACAGGTCCACAGGTGGACTGAAATTTGTTACAACTTGTTATGGAATTGTTGggttcataaaatttttgggaCCTTACTACATGCTGCTTATCACAAAAAGAAGGCAAATTGGTGCAATCTGTGGTCATACAGTATATGCTGTCTCAAAGAGTGAGATGATTCCACTGCAACATTCTTCTGTTCATTCTAACATCGCCAattctaaaaatgaaaacagATACAAGAAGCTCCTACGCATGGTCGACCTTACAAAGGATTTCTTTTTCAGCTACTCATACCATATTATGCGTAGTCTTCAAAGGAATTTGTGTGATAGTGAGACAGGTCATGTCCTTTATGAGACCATGTTTGTCTGGAATGAGTTTTTGACTCAAGAAATTAGGAATCACCTCCAGAATACTCTTTGGACAGTTGCACTAGTGTATGGCTTTTTTAAACAGGAAACACTTACAATATCTGGGCGGGAGTTCATACTTACACTCATTGCAAGACGGTCTCGCCATTATGCTGGCACTAGGTATTTGAGACGAGGTGTAAATGAGAAGGGTAGAGTAGCTAATGATGTTGAGACAGAACAAATTGTATTTGAGGATGTTCCTGAAGGTCTTCCAGTCCAAATATGCTCTGTTGTCCAGAATCGGGGTTCAATCCCTCTATTCTGGTCACAGGAAACTTCACGTCTAAATCTTAAGCCAGATATTATATTGTCAAAGAAAGATCAGAATTATCAAGCCACTAGACTTCACTTTGAAAATCTTGCCAAAAGATACGGGAATcccataataattttgaatttgataaagTCACACGAGAGGAAGCCTCGGGAGTCCATACTTCGTTCTGAGTTTGGTAATGCTATTGATTTCATCAACAAAGATTCATCAGAGGAGAACAAGCTGAGGTTTCTTCATTGGGATCTAAAACATTTTCAGAGCAAAGCTACAAATGTTTTGCTACTTCTGGGAAAAGTGGCTGCATATGCTTTGACATTAACagattttttatattgccaAGTGTCACCAACTCCTAGACCTGAAGACTCTGTAAAATGGCCGTCTATTAATTTTGCATACGGCAATATTGATATGGGAAGCTTTCGACCCACAAGACATGTTGATGTTGACAATGAAGATGCTAATAATTTAGAGAGGAAACCTAGTGGAGAAAACAACCTTGCTAACGGTAACCATTTTGTCAAGCCACCCATGTTCCAGAGGGGGGTTCTCAGAACCAATTGTATAGACTGCTTAGATCGCACAAATGTTGCACAATATGCATATGGGTTGGCTGCTCTTGGCCACCAGCTTCATGCTCTGGGAATTATTGACCACCCGAAAATTGACCTTGATGATCCTCTAAGTGATGATTTGATGGGATTttatgagtggatgggcgacacACTTGCACACCAGTATGGTGGTTCTGCTGCACACAACAAGATATTCTCTGAGAGGAGGGGACAATGGAAAGCTGCAACACAATCCCAGGAGTTTTTTAGGACTCTTCAACGCTATTACAGCAATGCTTACATGGATGCTGAGaaacaaaatgcaattaacaTATTCCTGGGGCATTTTCAGCCACAACTGGGTAAGCCTACTCTATGGGATTTAGGCTCAGATCAACATTATGATATAGGGAGACAAGGGGATGATGATGCAagGTCATTTGTCAAAAGATGTTTCTCAGATGGAAGCATCATTCATGGCAATTCTACACCTATGTCAGCCCCAAATCCAAAGCTTGAAAAATTCTCAAAGCTAGGTTTGCAGGATCAATCAGAAGAAGGAAGCAAGGCTTTTAGTGAGTCATCGCCTGAAATAACAACTTCTGAGAGTGACATGTCATTTTCAAGGTTTGTATCTGTATTAATTAATGTGAATGTAAATATGTAA 2145 0.3841 MASSENEPSSHSPPPPPAHACMHKFRLYETLSNFYMIGRDKSRTYWRVLKVDRLDPSELNVLEDSTIYTESECSDLLRRIHEGNRSTGGLKFVTTCYGIVGFIKFLGPYYMLLITKRRQIGAICGHTVYAVSKSEMIPLQHSSVHSNIANSKNENRYKKLLRMVDLTKDFFFSYSYHIMRSLQRNLCDSETGHVLYETMFVWNEFLTQEIRNHLQNTLWTVALVYGFFKQETLTISGREFILTLIARRSRHYAGTRYLRRGVNEKGRVANDVETEQIVFEDVPEGLPVQICSVVQNRGSIPLFWSQETSRLNLKPDIILSKKDQNYQATRLHFENLAKRYGNPIIILNLIKSHERKPRESILRSEFGNAIDFINKDSSEENKLRFLHWDLKHFQSKATNVLLLLGKVAAYALTLTDFLYCQVSPTPRPEDSVKWPSINFAYGNIDMGSFRPTRHVDVDNEDANNLERKPSGENNLANGNHFVKPPMFQRGVLRTNCIDCLDRTNVAQYAYGLAALGHQLHALGIIDHPKIDLDDPLSDDLMGFYEWMGDTLAHQYGGSAAHNKIFSERRGQWKAATQSQEFFRTLQRYYSNAYMDAEKQNAINIFLGHFQPQLGKPTLWDLGSDQHYDIGRQGDDDARSFVKRCFSDGSIIHGNSTPMSAPNPKLEKFSKLGLQDQSEEGSKAFSESSPEITTSESDMSFSRFVSVLINVNVNM 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1647 714 PANTHER PHOSPHOINOSITIDE PHOSPHATASE SAC3-RELATED 1 706 - -
Ssu1g1647 714 ProSiteProfiles Sac phosphatase domain profile. 161 557 IPR002013 GO:0016791
Ssu1g1647 714 Pfam SacI homology domain 97 392 IPR002013 GO:0016791
Ssu1g1647 714 PANTHER POLYPHOSPHOINOSITIDE PHOSPHATASE 1 706 IPR043573 GO:0043813|GO:0046856
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1647 Ssu-Chr1 39535770 39552009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1647 22 702 Acyl Lipid Metabolism Gene Families AT3G43220 66.862 0.0 905
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1647 K22913 - gmx:100786438 1283.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1647 1 39535770 39552009 Ssu1g1647 1 39535770 39552009 ECH
Ssu6g0542 6 8360789 8371184 Ssu1g1647 1 39535770 39552009 PCT