Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0533 ATGTTTAGATTGAAGAATTGTGAAGGCCCTGTGCGCTTCTTGTATCAGCAAACTCGGCATCACCCTTATCATAACAACCTTATGGCTTATTTAGTTGGTTGTGATCCTTGTTCCCACTTGAGCAAGACCTTTTCTCAGTacccttccttttcttcttctgatCCTGGTAGCTTCCTGTCTTTCCCATTTCTCCACAATCTTGTTTATGCTAATGTTTTTGGGGTTAGCAGAAGCATTGGTTTTGGTCCTAGAGGTTGTAGCTTTGACACTAGTGGTAGCTGTAGTGGTAATAGTGATAAGATCTTTGTGAGGGCAAAGGCAAGGGCCCGTGGCTTCGTGTCAAATGGCCCCCGGCCAATGCTGGCTGATTTGGAGCAAGGGAATTCTGTTAGGAGTGATGAATGTGATGCTACTTTGGTTAAGGTTGATAATGGATCTATAAATGGAAGTCCTGCCAAACCTCCTTGTTTCAGTGATCACCGGTTGTCCCAGAAACTTGTTGTTGCTGTTGACGTTGATGAGGTATTAGGAAACTTTGTGTCAGCTCTCAACAAGTTCATTGCAGATCGATATTCATCAAATTATTCAGTTTCTGAATATCATGTGTACGAGTTCTGTAAGATATGGAATTGTTCACGCGATGAAGCTGATATCCGTGTTCATGAGTTTTTCAAGACACCATTTTTCAAGTCAGGGATCCACCCTCTTCCAGGTGCTCAGACGGCTCTTCAGAAGTTATCAAGATTTTGTAGCCTATCAGTTGTAACATCACGGCAGAATGCAATTAAGGATCACACAATTGAGTGGATAGAGAATAATTTTCCAGGACTGTTTCATGAGATTCACTTTGGTAACCATTTTGCTCTTGATGGGGTGTCAAGACCAAAGTCAGAAATTTGTAGGTCTTTAAATGCCAAGGTTCTTATTGATGATAACCCACGATATGCCATAGAGTGTGCTGATGTTGGAATTAGAGTCCTactttttgattatgaaaactCATATCCTTGGTGCAAGAACGAGTCTGTTGATAAACACCCCCTGGTGACCAAAGTTAAGAACTGGGAAGAAGTTGAACAGCAATTAATGTCATTGATAGCTTTGTAG 1107 0.402 MFRLKNCEGPVRFLYQQTRHHPYHNNLMAYLVGCDPCSHLSKTFSQYPSFSSSDPGSFLSFPFLHNLVYANVFGVSRSIGFGPRGCSFDTSGSCSGNSDKIFVRAKARARGFVSNGPRPMLADLEQGNSVRSDECDATLVKVDNGSINGSPAKPPCFSDHRLSQKLVVAVDVDEVLGNFVSALNKFIADRYSSNYSVSEYHVYEFCKIWNCSRDEADIRVHEFFKTPFFKSGIHPLPGAQTALQKLSRFCSLSVVTSRQNAIKDHTIEWIENNFPGLFHEIHFGNHFALDGVSRPKSEICRSLNAKVLIDDNPRYAIECADVGIRVLLFDYENSYPWCKNESVDKHPLVTKVKNWEEVEQQLMSLIAL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0533 368 Pfam 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) 166 362 IPR010708 GO:0008253|GO:0009264
Ssu6g0533 368 Gene3D - 214 365 IPR023214 -
Ssu6g0533 368 PANTHER NUCLEOTIDASE YQFW-RELATED 74 366 - -
Ssu6g0533 368 SUPERFAMILY HAD-like 159 363 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0533 Ssu-Chr6 8225725 8229334 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0533 - - gmx:100793947 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0533 6 8225725 8229334 Ssu6g0533 6 8225725 8229334 ECH
Ssu6g0533 6 8225725 8229334 Ssu1g1665 1 40542390 40546709 PCT