Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1665 atggCTCATTTGTTAGGCTATGATCCTTGTTCCCATTTCAGCAGGGCCCTTTCCCATCACCCTTCTATTTCTTCCTCTGAGGTTAACAGAAACATTGGATTCACTCTTAAAGCCTGTTTTGATGCCAATGGTGGTGATAATGCTAATAGGGTCTTtgtgaaggaaaagaaaaagcccTATGGTTTTGCATGCCTTCCTCATCCACCCTTGTTAGGTGATTTAGAGAAGGGTATTTCTGTCAGAGATGATGGCTGTGATGCCACTCATATTGATGTTGAAGATAAATCTTTGGGTGGAAGTCCCACCAAACCCTTTTGTTTCCCTGATCAACAATTGCCCCAGAAACTTGTTGTTGCAGTTGATGTTGATGAAGTATTAGGAAACTTTGTGTCAGCTCTGAACGAGTTCATAGCAGATCGATACTCATCAAATTATTCAGTTTCTGAGTATCATGTGTATGAGTTCTTCAAGATATGGAACTGTTCACGTGACGAAGCTAATACCCGTGTTCATGAGTTTTTTGAGACCCCATACTTCAAGTCAGGGATCCAACCTATCCCAGGTGCTCAGACGGTCCTGCAGAAATTATCAAGATTCTGTAATCTATCAGTTGTAACATCTCGGCAAAATGCAATCAAGGATCACACACTTGAGTGGATAGAGAAGCATTTTTCAGGATTGTTTCAGGAAATTCACTTTGGAAACCACTTTGCTCTTGATGGGGTGTCAAGACCTAAGTCAGAGATTTGTGGGTCTTTAAATGCTAAGGTTCTTATTGATGATAACCCAAGATATGCCATAGAGTGCGCTGAAGCAGGAATTAGAGTCCTactttttgattatgaaaactCGTACCCTTGGTCCAAGACTGAGTCTGCTGATCAGCATCCCCTGGTGAACAAAGTTAAGAACTGGGAAGAAGTTGAACAACAATTGATGTCATTGATAGCTTCGTAG 957 0.3971 MAHLLGYDPCSHFSRALSHHPSISSSEVNRNIGFTLKACFDANGGDNANRVFVKEKKKPYGFACLPHPPLLGDLEKGISVRDDGCDATHIDVEDKSLGGSPTKPFCFPDQQLPQKLVVAVDVDEVLGNFVSALNEFIADRYSSNYSVSEYHVYEFFKIWNCSRDEANTRVHEFFETPYFKSGIQPIPGAQTVLQKLSRFCNLSVVTSRQNAIKDHTLEWIEKHFSGLFQEIHFGNHFALDGVSRPKSEICGSLNAKVLIDDNPRYAIECAEAGIRVLLFDYENSYPWSKTESADQHPLVNKVKNWEEVEQQLMSLIAS 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1665 318 PANTHER NUCLEOTIDASE YQFW-RELATED 12 317 - -
Ssu1g1665 318 Gene3D - 164 315 IPR023214 -
Ssu1g1665 318 SUPERFAMILY HAD-like 117 309 IPR036412 -
Ssu1g1665 318 Pfam 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) 116 311 IPR010708 GO:0008253|GO:0009264
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1665 Ssu-Chr1 40542390 40546709 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1665 - - aprc:113852922 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1665 1 40542390 40546709 Ssu1g1665 1 40542390 40546709 ECH
Ssu6g0533 6 8225725 8229334 Ssu1g1665 1 40542390 40546709 PCT