Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0506 ATGAAGCAGAAAACGCCATCGTCACCAACCACTGCAAGAATTGTGTTGAAGCACCAAAGTGACAAGTCCCTGAAGAGTCCACCACCACCACGCCCCAGAGCCTCTTCTAAGGCTCCGAAGTCACCGCCAGAGGTTGTGAATGGGGCATCCGTTTCGTCAACGAGAGCCAAGTCGGTGCCTCCGGACTTGAAGAACGTTTCAAGGGCCAAAAGGGGTGTTGTGGGGTCTCAAAAGGGTAGGGAAGCTGAAGAGGctaaagttgttgttgttgctaggCCACGGCGGAGGGTTGGGGGTTTTGGTTTGAGGAAGAGCGAAGATGATGACCCTGatgggaagaagaagaagaagaagaaggagttGAAGGAGAAGCTTGAGGTGAGTGAGAATTTGATCGAGAGTTTGCAGTCTGAGGTGCTGGGATTGAGGGAGGAATTGGATAGAGTTAAGAGCTTGAATGTGGAGCTTGAGTCTCACAACAGAAGGCTCACTCAGGATCTTGCTGCTGCTGAAGCTAAGATAGCAACTGTTGGCACTGGCAAGAGTGGAAAGGAGCCAATTGGAGAGCACCAGAGTCCCAAATTTAAGGACATAAAGAAACTCATTGCTGACAAATTGGAACGGTCTAGAGTAAAAAAGGAAGGTACTCCTGAAGTAATTTTTGCTAAAGCACCAATCCCAGCTCCAGCACCAAGTTATACCATTCCTGAAACTACAAGCATAGGAAGAAAATCTCCACCCAATACATGCCTGcagccacctccaccaccaccaattACAAGTGCAGGAAGAAAATCTCCACCCAACACATGCCTGcagccacctccaccaccaccactaccaccaccgaTTCCGTCTTGGCATTTGGCAAGATTAGCTAACACCCAAAAGGCCCCTGCAGTTGTTGAACTATTTCACTCCTTAAAGAATAAAGATGGGAAGATAGACTCAAAAGGATCAGTGAATCATCAGAGACCACTAGTTATTAGTGCACACAGTAGCATTGTTGGAGAAATTCAAAACCGTTCCGCTTATCTTTTAGCAATAAAGGCAGACATTGAAACAAAAGGAGAGCTCATTAATGACCTTATAAGAAAAGTAGTAGATGCAACCTTCACGGATATTGAAGAGGTCCTAAAGTTTGTTGATTGGCTTGACGGCAAACTATCATCATTGGCTGATGAACGTGCTGTCTTGAAGCATTTTAAGTGGCCTGAGAAGAAAGCTGATGCAATGCGAGAGGCTGCAGTTGAGTATAATGAGCTTAAAATGTTAGAACAGGAGATTTCCTCTTACAAGGATGACCCTGACATTCCATGTGGAGCTGCCTTAAAAAAGATGGCCGGCCTATTAGACAAGTCTGAGCGGAGCATACAGAGGCTAATCAAGCTACGAAATTCAGTCATACATTCATATCAAGTGTACAACATTCCAACTGCATGGATGCTTGATTCTGGAATAATGAGCAAgATAAAGCAGGCTTCCATGACTCTGGTCAAGACGTACATGAAAAGAGTGACAATGGAGCTTGAATCCATTCGGAATTCAGACAGAGAATCTATTCAAGATTCTCTTTTGCTTCAGGGCGTGTATTTTGCATATAGGGCTCATCAGTTTGCTGGAGGATTGGACTCAGAAACAATGTGTGCTTTTGAAGAGATAAGGCAACGTGTACCAGGACACCTAGCAGGGTCTCGGGAACTATTGGCTGGCATACCATAA 1722 0.4216 MKQKTPSSPTTARIVLKHQSDKSLKSPPPPRPRASSKAPKSPPEVVNGASVSSTRAKSVPPDLKNVSRAKRGVVGSQKGREAEEAKVVVVARPRRRVGGFGLRKSEDDDPDGKKKKKKKELKEKLEVSENLIESLQSEVLGLREELDRVKSLNVELESHNRRLTQDLAAAEAKIATVGTGKSGKEPIGEHQSPKFKDIKKLIADKLERSRVKKEGTPEVIFAKAPIPAPAPSYTIPETTSIGRKSPPNTCLQPPPPPPITSAGRKSPPNTCLQPPPPPPLPPPIPSWHLARLANTQKAPAVVELFHSLKNKDGKIDSKGSVNHQRPLVISAHSSIVGEIQNRSAYLLAIKADIETKGELINDLIRKVVDATFTDIEEVLKFVDWLDGKLSSLADERAVLKHFKWPEKKADAMREAAVEYNELKMLEQEISSYKDDPDIPCGAALKKMAGLLDKSERSIQRLIKLRNSVIHSYQVYNIPTAWMLDSGIMSKIKQASMTLVKTYMKRVTMELESIRNSDRESIQDSLLLQGVYFAYRAHQFAGGLDSETMCAFEEIRQRVPGHLAGSRELLAGIP 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0506 573 MobiDBLite consensus disorder prediction 74 91 - -
Ssu6g0506 573 MobiDBLite consensus disorder prediction 231 285 - -
Ssu6g0506 573 MobiDBLite consensus disorder prediction 248 285 - -
Ssu6g0506 573 PANTHER F11A17.16 1 258 - -
Ssu6g0506 573 PANTHER F11A17.16 262 573 - -
Ssu6g0506 573 Coils Coil 408 435 - -
Ssu6g0506 573 MobiDBLite consensus disorder prediction 99 123 - -
Ssu6g0506 573 MobiDBLite consensus disorder prediction 1 123 - -
Ssu6g0506 573 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 1 258 IPR040265 -
Ssu6g0506 573 MobiDBLite consensus disorder prediction 1 17 - -
Ssu6g0506 573 Coils Coil 118 173 - -
Ssu6g0506 573 MobiDBLite consensus disorder prediction 233 247 - -
Ssu6g0506 573 MobiDBLite consensus disorder prediction 46 60 - -
Ssu6g0506 573 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 262 573 IPR040265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0506 Ssu-Chr6 7810092 7814588 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0506 - - gmx:100820135 867.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0506 6 7810092 7814588 Ssu6g0506 6 7810092 7814588 ECH
Ssu6g0506 6 7810092 7814588 Ssu1g1684 1 41046941 41051324 PCT