Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0500 ATGTACGCGGCGGAGATTTTCGGCGTCTTCGCCGTGCGCGGCGGCGATGCTTCGCCGGCAGTGGCCGGCACCTTCAACAAGTGTTTCAAAATCGCAACTTTCACTTCCCGTAACGGCGTGAATATGAGGTGGGCCAAGGCTTTGACGCTTTGTCGCTGCACCGTTGACTCAAAGTCCGTCGGCGGCGACGTTTTCTCGGTGACGCCGTCGAACAAGTCTGACGTGGACTACCTTGGGGAGAGCACCAAAGGTGATTTGAACGTCAAGTTGGAGCATCTTGAGGCTTTTGGAATTGATGGTCATGCTGCGTTAGAAGGTCCAATTGAGGAAGTGGCCAGATCAGAGACAAGAGAAGCAGAGGATTTGCTAAAAGACTTGGGCATTCCGAGCCCTTCTTCATCCAGAAATTCGCCTCGTGGAATATTCTGCAGCCGTACATTGAATCTGCGGTCCATCAGTGCCATTGGATATGACATGGACTATACCTTGATCCAATATAATGTGATGGCTTGGGAAGGGAGGGCTTATGACTACTGTATGGAAAACCTTAGGAATATGGGTTTCCCTGTCGATGGACTTGCCTTTGATCCTGACCTGGTAATTAGAGGCCTTGTCATAGACAAAGAGAAAGGCAATTTGGTTAAAGCTGATCGATTTGGTTACATAAAAAGAGCCATGCATGGCACCCAAATGTTATCTACTCGAACTGTGAGTGAGATGTATGGAAGAGAACTGGTGGACCTGCGAAAAGAAAGTCGATGGGAGTTTCTCAATACTCTGTTTTCCGTGTCTGAAGCTGTGGCCTACATGCAGATGGTTGACAGATTGGATGATGGGACTGTACCAGCAGATCTTGGCCCTCTTGATTATAAAGGGCTATATAAGGCTGTTGGAAAAGCTCTCTTTTGGGCACATGTCGAAGGTCGCCTTAAGAGCGAGATCATGTCCAAGCCTGAACTGTTTGTGGAGCCTGATCCAGAATTACCTTTGGCACTTTTGGATCAGAAGGAGGCTGGCAAAAAACTGCTACTAATTACCAACTCAGATTATCATTACACAGACAAAATGATGCGGCATTCTTTTAATAGATTCCTTCCCAATGATATGGGTTGGCGAGATCTATTTGACATTGTAATTGTCTCAGCAAGAAAACCAGAGTTCTTCCAAATGTCACACCCCATGTATGAAGTGGTCACAGGCGAGGGTCTTATGCGTCCATGCTTCAAAGCTCAAACTGGTGGTTTGTACTCAGGGGGAAGTGCACAGATGGTTGAAAATTCCCTAGATATTCATGGAGATGAGATATTGTATGTCGGCGACCATATTTACACTGATGTGAGTCAATCCAAAGTCCATTTGCGATGGCGAACGGCATTGGTTTGTCGAGAACTGGAAGAAGAGTACAATGCCTTGATTGGTAGCCGGAGATATAGAGAATTATTGGTGGACCTTATAAATCAAAAGGAGGTTGTAGGGGATCTCTTCAACCAACTTCGGCTGGCTCTGCAGAGGCGAAGCAAAGATCGTCCTGCTCAAACCCTAGCAGCAACTAACATGAATGATGAAGACCTCACTGAAAGCATGCAAAAGCTACTTATTGTTATGCAAAGACTGGATGAGAAAATTGCTCCAATGCTGGAGGCAGATGGGGAGCTCTTCAATTCAAGGTGGGGTTTTCTATCTCGTGCTGGATTGTGGGATAAAAGCCACTTGATGAGACAAATTGAGAAATATGCTGATATTTATACATCTAGGGTctcaaactttttatattatacaccCTTCATGTATTTCCGCTCTCAGGAACAGAACCTTGCGCACGACTCGTACACAGACTATTGTTCACAAGTCTATAATGAGAATTCTTCCTAG 1872 0.4535 MYAAEIFGVFAVRGGDASPAVAGTFNKCFKIATFTSRNGVNMRWAKALTLCRCTVDSKSVGGDVFSVTPSNKSDVDYLGESTKGDLNVKLEHLEAFGIDGHAALEGPIEEVARSETREAEDLLKDLGIPSPSSSRNSPRGIFCSRTLNLRSISAIGYDMDYTLIQYNVMAWEGRAYDYCMENLRNMGFPVDGLAFDPDLVIRGLVIDKEKGNLVKADRFGYIKRAMHGTQMLSTRTVSEMYGRELVDLRKESRWEFLNTLFSVSEAVAYMQMVDRLDDGTVPADLGPLDYKGLYKAVGKALFWAHVEGRLKSEIMSKPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMRHSFNRFLPNDMGWRDLFDIVIVSARKPEFFQMSHPMYEVVTGEGLMRPCFKAQTGGLYSGGSAQMVENSLDIHGDEILYVGDHIYTDVSQSKVHLRWRTALVCRELEEEYNALIGSRRYRELLVDLINQKEVVGDLFNQLRLALQRRSKDRPAQTLAATNMNDEDLTESMQKLLIVMQRLDEKIAPMLEADGELFNSRWGFLSRAGLWDKSHLMRQIEKYADIYTSRVSNFLYYTPFMYFRSQEQNLAHDSYTDYCSQVYNENSS 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0500 623 Pfam 5' nucleotidase family 141 609 IPR008380 -
Ssu6g0500 623 PANTHER 5'-NUCLEOTIDASE DOMAIN-CONTAINING 56 616 IPR008380 -
Ssu6g0500 623 TIGRFAM HAD-IG-Ncltidse: HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase 141 479 IPR008380 -
Ssu6g0500 623 PANTHER HAD-SUPERFAMILY HYDROLASE, SUBFAMILY IG, 5'-NUCLEOTIDASE 56 616 - -
Ssu6g0500 623 Gene3D - 304 491 IPR023214 -
Ssu6g0500 623 SUPERFAMILY HAD-like 138 610 IPR036412 -
Ssu6g0500 623 CDD HAD_cN-II 142 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0500 Ssu-Chr6 7698007 7705102 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0500 - - gmx:100800826 1142.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0500 6 7698007 7705102 Ssu6g0500 6 7698007 7705102 ECH
Ssu6g0500 6 7698007 7705102 Ssu1g1685 1 41063418 41090366 PCT