Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0484 ATGTATGACAAAATGTCATCTGTTATGGAGTATATGCGTAAGTTGCAATTTCCGTGGACGACCTCTACTTATAACAATGTGATTGAGGCATTCGCAGATGTAGGTGATGCGAAGCACATGGAGTGTACCTTTGATCAGATGCGTGCTGAGGGTATGAAAGCAGATACCAAAACTTTCTGCTGCCTTATCAATGGTTATGCGAAAGCAGGTCTCTTCCATAAAGTAATTAGCAGTGTTCGCTTGGCTGGAAAGTTTGAGATACCTGAGAATACTGCTTTTTATAATGCAGTCTTATCTGCGTGTGCGAAGGCAGAGGATTTGATGGAAATGGAGAGAGTTTTCCAGCGTATGAAAGATAGTCAATGTCAACCAGACAACACAACATACACGATCATGGTCAAGGCATATAGAAAAGAGGGTATGAATGACAAGATATACTATTTGGAGCAGGAAAGGCAGATGATGATGACTGATGATAAAAAGTGA 486 0.4074 MYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKHMECTFDQMRAEGMKADTKTFCCLINGYAKAGLFHKVISSVRLAGKFEIPENTAFYNAVLSACAKAEDLMEMERVFQRMKDSQCQPDNTTYTIMVKAYRKEGMNDKIYYLEQERQMMMTDDKK 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0484 161 Gene3D Tetratricopeptide repeat domain 82 157 IPR011990 GO:0005515
Ssu6g0484 161 Gene3D Tetratricopeptide repeat domain 1 81 IPR011990 GO:0005515
Ssu6g0484 161 TIGRFAM PPR: pentatricopeptide repeat domain 23 55 IPR002885 -
Ssu6g0484 161 TIGRFAM PPR: pentatricopeptide repeat domain 58 76 IPR002885 -
Ssu6g0484 161 TIGRFAM PPR: pentatricopeptide repeat domain 94 125 IPR002885 -
Ssu6g0484 161 PANTHER ATPASE EXPRESSION PROTEIN 3 1 158 - -
Ssu6g0484 161 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 90 124 IPR002885 -
Ssu6g0484 161 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 20 54 IPR002885 -
Ssu6g0484 161 Pfam PPR repeat family 90 136 IPR002885 -
Ssu6g0484 161 Pfam PPR repeat family 21 68 IPR002885 -
Ssu6g0484 161 PANTHER OS03G0309800 PROTEIN 1 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0484 Ssu-Chr6 7505962 7506447 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0484 23 141 Glycosyltransferase AT1G05670 22.131 3.61e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0484 - - gmx:100786610 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0484 6 7505962 7506447 Ssu6g0484 6 7505962 7506447 ECH
Ssu6g0484 6 7505962 7506447 Ssu1g1695 1 41510854 41511975 PCT