Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1695 ATGCTTAGAGAGCAACCCTATTACCAACCCAGAGAAGATACTTACATGAAACTCATTGGGTTGCTTGGAAAATCCGGCCAACCCCATCGTGCCCATCAGCTTTTTAACTCTATACACGAAGATGGTTGTGAAAGTACCAAACTTTACACAGCCTTAATTGCAGCCTATTGTCAGAACAACCTGATTGATGAGGCGTTTTCAATTCTTGATGAGATGAGGAACTTCCCTCGTTGCCGGCCTGATATTTTCACATACAGTACCTTGATAAAAGCTCATGTGGatgctttgaaatttgaaatggtTGAGTTGCTGTATGATGAAATGGCTAAAAGATCTATCATGCCAAACACTCTCACCCAGAACATGGTGCTGAGTGGTTATAGCAAGGCTGGGAGGTTTGATCAGATGGAGAGAATAGTGTCAAGTATGACGGAGAGCACTACGTGCAAACCTGATGTTTGGACAATGAACACAATCATCAGTGTCTTTGGTGATAAGGGTCAGATTGATATGATGGAGAAATGGTATGAGAAATTTTGTAGTTTTGGGATACAACCACAAAGTagcacttttaatattttaattgtagctTATGGTAATAAAAGAATGTATGACAAAATGGCATCAGTTATGCAGTGTATGCGCAAGGTAAAATGTCCATGGACGACCTCGACTTATAACAACGTGATTGAGGCATTTGCGGCTGTAGGTGATGCTGAAAATATGGAATGTGCATTTGATCAACTGTGTGCTGAGGGTTTGAAAGCAGATACGATGACTTTCTGCTGCCTTATCAATGGTTATGCTAATGCAGTCATATCTGCATGTGCAAAGGAAGATGCTTTGATGGAAATGGAAAGATTTTTCAAGCTTATGAAAGAGAAAGATTGTCAACCAGATAACACAACATACTCTGTCATGATTGAAGCATACAGAAAAGAAAGTATGAACGACAAAATATACTATTTGGAGCAGGACAAGCAGATGATGATATCTGATGACAAAAAACTGAATGAGCCTGAGGAGACAATCCTTGGTTGA 1041 0.3852 MLREQPYYQPREDTYMKLIGLLGKSGQPHRAHQLFNSIHEDGCESTKLYTALIAAYCQNNLIDEAFSILDEMRNFPRCRPDIFTYSTLIKAHVDALKFEMVELLYDEMAKRSIMPNTLTQNMVLSGYSKAGRFDQMERIVSSMTESTTCKPDVWTMNTIISVFGDKGQIDMMEKWYEKFCSFGIQPQSSTFNILIVAYGNKRMYDKMASVMQCMRKVKCPWTTSTYNNVIEAFAAVGDAENMECAFDQLCAEGLKADTMTFCCLINGYANAVISACAKEDALMEMERFFKLMKEKDCQPDNTTYSVMIEAYRKESMNDKIYYLEQDKQMMISDDKKLNEPEETILG 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1695 346 Pfam PPR repeat family 47 92 IPR002885 -
Ssu1g1695 346 Pfam PPR repeat family 151 197 IPR002885 -
Ssu1g1695 346 Pfam PPR repeat family 270 311 IPR002885 -
Ssu1g1695 346 TIGRFAM PPR: pentatricopeptide repeat domain 48 81 IPR002885 -
Ssu1g1695 346 TIGRFAM PPR: pentatricopeptide repeat domain 83 117 IPR002885 -
Ssu1g1695 346 TIGRFAM PPR: pentatricopeptide repeat domain 190 222 IPR002885 -
Ssu1g1695 346 TIGRFAM PPR: pentatricopeptide repeat domain 270 300 IPR002885 -
Ssu1g1695 346 TIGRFAM PPR: pentatricopeptide repeat domain 155 186 IPR002885 -
Ssu1g1695 346 TIGRFAM PPR: pentatricopeptide repeat domain 14 44 IPR002885 -
Ssu1g1695 346 TIGRFAM PPR: pentatricopeptide repeat domain 119 153 IPR002885 -
Ssu1g1695 346 PANTHER ATPASE EXPRESSION PROTEIN 3 1 271 - -
Ssu1g1695 346 PANTHER OS03G0309800 PROTEIN 268 334 - -
Ssu1g1695 346 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 152 186 IPR002885 -
Ssu1g1695 346 Gene3D Tetratricopeptide repeat domain 147 269 IPR011990 GO:0005515
Ssu1g1695 346 Gene3D Tetratricopeptide repeat domain 1 75 IPR011990 GO:0005515
Ssu1g1695 346 Gene3D Tetratricopeptide repeat domain 76 146 IPR011990 GO:0005515
Ssu1g1695 346 Gene3D Tetratricopeptide repeat domain 270 330 IPR011990 GO:0005515
Ssu1g1695 346 Pfam PPR repeat 121 145 IPR002885 -
Ssu1g1695 346 Pfam PPR repeat 224 253 IPR002885 -
Ssu1g1695 346 Pfam PPR repeat 14 43 IPR002885 -
Ssu1g1695 346 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 45 75 IPR002885 -
Ssu1g1695 346 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 81 115 IPR002885 -
Ssu1g1695 346 PANTHER ATPASE EXPRESSION PROTEIN 3 268 334 - -
Ssu1g1695 346 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 146 IPR002885 -
Ssu1g1695 346 PANTHER OS03G0309800 PROTEIN 1 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1695 Ssu-Chr1 41510854 41511975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1695 35 320 Miscellaneous Gene Families AT4G11690 20.946 9.97e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1695 - - gmx:100776657 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1695 1 41510854 41511975 Ssu1g1695 1 41510854 41511975 ECH
Ssu6g0484 6 7505962 7506447 Ssu1g1695 1 41510854 41511975 PCT