Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0461 ATGTCGCAGCCTTCAATGAAACGGCTACATTTAGTTCAAGGTTTACTGAAAATGAAGAAGTGGTATGGAGGCCTGTTGATAATGGCTTTGGGTATGATGTTGTTTCTCTTCTATAACCTCAAAGGAATTCAGCCACAGGAGCAGTCTTCAAAACAGTCAGCATACAGTTTCTTCAATAACCATACACCAGATGATTCTATTAAAGGAACCAACAATCTTCCAGGAAACTCTTCCGACGTGGAACTAAAAAAGGTACCAACACCCACAAAAAGGCCATATTTGGTACATGTTGCAGGACTTGATGATCTGTATGACATGAAAAATTTGTCTAAAGGAGAGATGAATGCTGTGCTTATTTGGGATTCCTTACATTCCTTGCTGTCAAGGTCAGATGGTTTGGCCGAAACAGCTCAAGGAGTTAAAGAGGCTTCTGTAGCATGGAAAGAGTTGCTGTCCACTGTTGAAAAGTACAAAGCTTCTAAGATTAATAAGATGGATGGCCCAGAAAATCAAAACTGCCCATTCTCTGTGACCTCACCTGGTAAGACTGTACCAGATAGTGGAATCACTCTTGATCTCCCTTGTGGTCTGGTTGTAGATTCTTCTATTACACTGATTGGAATCCCTAATGGACAAAACAGAAGCTTCCAGATTGACCTTGCTGGCCAAGAGCAAGAAGAGGAGCCAAATCCTCCAATTGTCTTCCATTATAATGTGAGTCTTCCTGGAGAAAACATGACAGAGGAACCATATATTGTTCAAAATACATGGACTAGTGATTTAGGGTGGGGAAAAGAGGAAAGGTGTCCTGCTCGTGGTTCTGCCAACATCCAAAAAGTTGATGAACTTGTTCTCTGCAATGTACAACCTGTCAGAAGTAACAATGAAGGGAATGTAAATGTTGCTCAACCTGCTAGTGATATACCTTCTAATATTTCCTCAGAAAGTGCACATAGAACTGCTATTTTCCCCTTTGCTGAGGGTAATCCTTTCACTTCCACATTGTGGGTTGGTTCAGAGGGATTTCATATGACTGTGAATGGAAGGCATGAAACATCTTTTGCATATAGGGAGAAGCTTGAACCATGGTTAGTCAGCAGTATTAAAGTAGCAGGCAGTTTAAGTCTCTTATCAATCCTGGCTAAAGGTTTACCTGTTACTGAAGATAATGATATTGCTGTTGATATTGAGAATCTGAAGGCTCCTTCTATCTCCAGAAAAAGGCTTGTTTTGTTGATTGGAGTATTCTCTACCGGAAACAACTTTGAGCGTCGCATGGCCCTAAGGAGGTCTTGGATGCAATATGAGGCTGTACGCTCTGGAGAAGTTGCTGTCCGTTTTTTCATTGGGCTTCACAAGAACAATAGagttaattttgagttatgGACTGAAGCTCAAGCATATGGAGATATTCAAATAATGCCTTTTGTAGATTATTATAGTTTGATTTCTTTGAAGACAATTGCAATTTGCATTATGGGGACAAAAATCATCCATTCTAAATACATCATGAAAACAGATGATGATGCCTTTGTTAGGATTGATGAAGTGCTTTCCAGCCTTAAAGGAAAGCCATCCGAAGGCCTCTTGTACGGTCTCATATCATCTAAATCATCTCCTCAGAGGGACGAAGGCAGCAAGTGGTACATCAGTGAGGAGgaatGGCCACATGATACATACCCACCATGGGCACATGGTCCTGGCTATGTTATCTCTCGAGACATAGCAAAATTCATTGTCCACGGCCACCAAGAAAGAAAACTCAAGctCTTTAAATTAGAAGATGTTGCCATGGGCATATGGATTGAACAGTTCAAGAATGATGGTAAAGAAGTGCATTATGCGAATGATGAGAGGTTTTACAATGCTGGATGTGAATCAAATTATGTACTTGCCCATTATCAAAGCCCAAGGATGGTGCTATGCCTTTGGGAGAAATTACAGAAAGAACACCAGCCAGTATGCTGTGAGTAG 1974 0.4053 MSQPSMKRLHLVQGLLKMKKWYGGLLIMALGMMLFLFYNLKGIQPQEQSSKQSAYSFFNNHTPDDSIKGTNNLPGNSSDVELKKVPTPTKRPYLVHVAGLDDLYDMKNLSKGEMNAVLIWDSLHSLLSRSDGLAETAQGVKEASVAWKELLSTVEKYKASKINKMDGPENQNCPFSVTSPGKTVPDSGITLDLPCGLVVDSSITLIGIPNGQNRSFQIDLAGQEQEEEPNPPIVFHYNVSLPGENMTEEPYIVQNTWTSDLGWGKEERCPARGSANIQKVDELVLCNVQPVRSNNEGNVNVAQPASDIPSNISSESAHRTAIFPFAEGNPFTSTLWVGSEGFHMTVNGRHETSFAYREKLEPWLVSSIKVAGSLSLLSILAKGLPVTEDNDIAVDIENLKAPSISRKRLVLLIGVFSTGNNFERRMALRRSWMQYEAVRSGEVAVRFFIGLHKNNRVNFELWTEAQAYGDIQIMPFVDYYSLISLKTIAICIMGTKIIHSKYIMKTDDDAFVRIDEVLSSLKGKPSEGLLYGLISSKSSPQRDEGSKWYISEEEWPHDTYPPWAHGPGYVISRDIAKFIVHGHQERKLKLFKLEDVAMGIWIEQFKNDGKEVHYANDERFYNAGCESNYVLAHYQSPRMVLCLWEKLQKEHQPVCCE 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0461 657 SUPERFAMILY Concanavalin A-like lectins/glucanases 190 382 IPR013320 -
Ssu6g0461 657 MobiDBLite consensus disorder prediction 62 84 - -
Ssu6g0461 657 CDD GLECT 190 379 IPR001079 GO:0030246
Ssu6g0461 657 Gene3D - 401 634 - -
Ssu6g0461 657 Pfam Galactosyltransferase 423 606 IPR002659 GO:0006486|GO:0016020|GO:0016758
Ssu6g0461 657 MobiDBLite consensus disorder prediction 62 78 - -
Ssu6g0461 657 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 105 649 IPR002659 GO:0006486|GO:0016020|GO:0016758
Ssu6g0461 657 SMART galectin_3 187 382 IPR001079 GO:0030246
Ssu6g0461 657 SMART Gal_bind_lectin_2 193 381 IPR001079 GO:0030246
Ssu6g0461 657 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 189 382 IPR001079 GO:0030246
Ssu6g0461 657 PANTHER BETA-1,3-GALACTOSYLTRANSFERASE GALT1 105 649 - -
Ssu6g0461 657 Gene3D - 183 380 - -
Ssu6g0461 657 Pfam Galactoside-binding lectin 190 380 IPR001079 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0461 Ssu-Chr6 7188038 7194497 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0461 16 657 Glycosyltransferase AT3G06440 50.853 0.0 633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0461 K20843 - gmx:100816729 1224.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0461 6 7188038 7194497 Ssu6g0461 6 7188038 7194497 ECH
Ssu6g0461 6 7188038 7194497 Ssu2g1590 2 63753379 63756941 PCT