Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1590 atgaaaaagttgtATGGAGGAGTTCTGGTTGCCTCACTGTTTATGTTGTTTATGCTTATGATCCTGCGATACGGGGTCATGAAAAATCCAATTGGTGAAGGTTATCTGACTATTCCTGTCCTCATTAATGGTACTAATCCTCTAGAATGGATAAATCCCACAGTTCCGCCTGCTATTCAAAATCCAGATGATCATCCTCAAGTTATTTCTTCTGATATTTTAGTATCTAGCCTCTTTGCTGGGAGCAACTTTTCCAAAGAAGAGCAACAAGCTCTGCAGACATGGAACCAATTGAACCACTTAATTGATCATGTTCAGGGTTTACCCAATGCAGCAGAAGCTATCAAGGAGGCTGCCAGTGCGTGGAATAGTCTTATTTCCTCAATTGAAGAGCAAAAACAAGGTCATGCAAATGATAGTTCAAGAACTAAAGAGAAGCAGTGTCCccattttcttaataaaatgaattcCACTGAACTTGGTAATAGTAGTTACAAACTGCAAGTGCCTTGTGGCTTGACACAAGGTTCTTCCATCACTGTAATTGGCATTCCAAATGGTCTTCTAGGAAATTTTCGGATTGATTTGACTGGAGAACCACTTCCGGGGGAGCCCGATCCTCCAATTATTTTACACTACAATGTTCGGCTTCATGGAGATAAAATCACTGAAGATCCAGTAGTTGTCCAAAACACCTGGACTATAGCTCATGATTGGGGTGAAGAGGAACGTTGTCCATCCCCTACTCCTGAAAAGGTTGAGAAAGTTGATGAATTGGAGCAGTGTAATAAGATTGTAGGGAAGAACATTAGCCAACTTTACTCAGCTGGAATGCATTCCCACACTTCAAGACAATCTTCAACAACTGAAGAACAATCAATAAATAGGAAATACTTTCCTTTTAAGCAAGGTTACCCATTTGTAGCAACTCTTAGAGTGGGATCTGAGGGAATCCAGATGACAGTTGATGGAAAGCACATAACTTCATTTGCTTTCCGTGAAACTTTGGAGCCATGGCTTGTCAGTGAAATAAAGATCTCAGGGGACCTCAAATTAATATCTATTCTTGCCAGTGGTCTGCCCACATCAGAGGATTCAGAGCATATTATTGATCTAGAATCATTGAAGTCAAGTCCTATATCTGCACAGACCCCATTGGATCTCTTCATTGGTGTTTTCTCTACTGCTAACAATTTTAAACGTCGGATGGCTGTTAGAAGAACCTGGATGCAGTACAATGCAGTTCGATCAAATACAACAGCTGTGCGCTTCTTTGTTGGTTTGCATAAAAGCCCAATAGTTAATGAAGAGTTGTGGAGAGAAGCACAAACTTATGGGGACGTGCAGCTGATGCCATTTGTTGACTACTACAGTCTCATCACCTGGAAATCTTTAGCTATCTGCATTTTTGGGACCCAAGTTTCAGCAAAGTTTGTCATGAAGACAGATGATGATGCTTTTGTCCGGGTAGATGAAGTTCTAGGTTCTTTGCATAGGATCAATGTTGCTCATGGGTTACTATACGGACTCATCAATTCGGATTCCCGACCTCATCGAAATACTGATAGCAAATGGTACATCAGTCCAGAGGAATGGAGCGAAGGAACTTATCCTCCATGGGCACACGGTCCCGGCTATGTGGTCTCACAAGATATAGCAAGGATGGTGTCCAAGAAATTCAGAGAGAACCATTTGAAGATGTTTAAATTAGAAGACGTTGCAATGGGAATCTGGATCGCAGACATGAAGAAGGAAGGTCTAGAAGTTCGGTATGAGAATGAGGGCAGAGTCTATCCTGAGGGATGTAAGGATGGTTATGTGGTTGCCCATTACCAAGGCCCTAGGGAGATGCTGTGTTTGTGGCAGAAACTTCAGGAAGGAAAGGGTGCAAAATGCTGTGGTGATAGGAAATGA 1914 0.4138 MKKLYGGVLVASLFMLFMLMILRYGVMKNPIGEGYLTIPVLINGTNPLEWINPTVPPAIQNPDDHPQVISSDILVSSLFAGSNFSKEEQQALQTWNQLNHLIDHVQGLPNAAEAIKEAASAWNSLISSIEEQKQGHANDSSRTKEKQCPHFLNKMNSTELGNSSYKLQVPCGLTQGSSITVIGIPNGLLGNFRIDLTGEPLPGEPDPPIILHYNVRLHGDKITEDPVVVQNTWTIAHDWGEEERCPSPTPEKVEKVDELEQCNKIVGKNISQLYSAGMHSHTSRQSSTTEEQSINRKYFPFKQGYPFVATLRVGSEGIQMTVDGKHITSFAFRETLEPWLVSEIKISGDLKLISILASGLPTSEDSEHIIDLESLKSSPISAQTPLDLFIGVFSTANNFKRRMAVRRTWMQYNAVRSNTTAVRFFVGLHKSPIVNEELWREAQTYGDVQLMPFVDYYSLITWKSLAICIFGTQVSAKFVMKTDDDAFVRVDEVLGSLHRINVAHGLLYGLINSDSRPHRNTDSKWYISPEEWSEGTYPPWAHGPGYVVSQDIARMVSKKFRENHLKMFKLEDVAMGIWIADMKKEGLEVRYENEGRVYPEGCKDGYVVAHYQGPREMLCLWQKLQEGKGAKCCGDRK 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1590 637 PANTHER - 65 626 - -
Ssu2g1590 637 Gene3D - 378 597 - -
Ssu2g1590 637 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 165 358 IPR001079 GO:0030246
Ssu2g1590 637 SMART Gal_bind_lectin_2 169 357 IPR001079 GO:0030246
Ssu2g1590 637 Pfam Galactoside-binding lectin 165 356 IPR001079 GO:0030246
Ssu2g1590 637 SUPERFAMILY Concanavalin A-like lectins/glucanases 165 358 IPR013320 -
Ssu2g1590 637 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 65 626 IPR002659 GO:0006486|GO:0016020|GO:0016758
Ssu2g1590 637 CDD GLECT 165 355 IPR001079 GO:0030246
Ssu2g1590 637 Pfam Galactosyltransferase 400 583 IPR002659 GO:0006486|GO:0016020|GO:0016758
Ssu2g1590 637 Gene3D - 156 356 - -
Ssu2g1590 637 SMART galectin_3 165 358 IPR001079 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1590 Ssu-Chr2 63753379 63756941 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1590 1 633 Glycosyltransferase AT1G26810 64.486 0.0 852
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1590 K14413 - gmx:100780913 1201.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1590 2 63753379 63756941 Ssu2g1590 2 63753379 63756941 ECH
Ssu6g0461 6 7188038 7194497 Ssu2g1590 2 63753379 63756941 PCT