Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0457 ATGGCGTCTGTGCCACTGCTGAGGTGCTCCCCACTCTCATCTCCCCTCTTCTCCAAACCCTCCTCCCTTTGGACCCAATCCCACAAGCACAAGCGCGTTTCAATTCCCATAGTGAACTCAATTGCAATATCCAATGCACAGAACAAAGAGAGAGTGAAGCTTAAGCAACTCTTCCACGAAGCCTACGAGAGATGCCGCACTGCTCCCACGGAAGGAGTTTCCTTCACCCTCGAAGACTTCACCGCCGCTCTCGACAAGTACGACTTCAACTCTGAAGTTGGCACCAAGATTAAAGGCACTGTATTTTACACAGATGCCAATGGAGCGGTTGTTGATGTCACTGCAAAGTCCTCGGCATATTTGCCACTGCAAGAGGCGTGCATCCGCAGGGTTAAGCACGTGGAAGAGGCGGGCATAGTTGCTGGGTTGAGAGAGGAGTTTTTGATCGTTGGCGAGAACGAAGCAGATGATAGCTTGATCTTGAGTTTAAGGTCTATCCAGTATGACCTTGCGTGGGAACGTTGTAGACAGCTTCAAGCAGAAGATGTTGTTGTCAAGGGTAAGGTTGTGGGGGCAAACAAAGGTGGAGTGGTGGCTGAGGTGGAAGGGCTTAGAGGGTTTGTTCCATTGTCACAAATATCAACGAACTCAAATGTAGAAGAGCTTCTTGATAAGGAGCTTCCTCTTAAGTTTGTCGAGGTGGATGAGGAACAATCTAGACTTGTCCTCAGTAACCGCAAGGCCATAGCTGGCAACCAGGCACAGCTAGGAATTGGATCAGTAGTTACTGGCTCTGTTCAAAGCCTGAAGCCATATGGTGCCTTCATTGACATTGGTGGAATTAATGGCCTCCTTCACGTTAGTCAGATCAGTCATGACCGTGTAACTGACATTTCAACTGTTCTTCAACCCGGTGACATATTAAAGgtGATGATCTTAAGTCATGATCGAGAGAGAGGTCGAGTAAGCCTTTCCACTAAGAAGTTGGAACCCACACCTGGAGACATGATCCGCAATCCGAAGCTTGTCTTTGAGAAGgcAGAGGAGATGGCTCAGACATTCAGACAAAGAATAGCCCAAGCAGAAGCTATGGCTCGTGCAGACATGCTTCGGTTCCAGCCTGAGAGTGGATTGACTCTCAGCGGTGATGGAATCCTGGGACCATTTACTTCAGACTTGCCTGAAGAGGGACTGGATCTAAGTGAGGTACCACCAGCTGAAGAATCATGA 1230 0.4846 MASVPLLRCSPLSSPLFSKPSSLWTQSHKHKRVSIPIVNSIAISNAQNKERVKLKQLFHEAYERCRTAPTEGVSFTLEDFTAALDKYDFNSEVGTKIKGTVFYTDANGAVVDVTAKSSAYLPLQEACIRRVKHVEEAGIVAGLREEFLIVGENEADDSLILSLRSIQYDLAWERCRQLQAEDVVVKGKVVGANKGGVVAEVEGLRGFVPLSQISTNSNVEELLDKELPLKFVEVDEEQSRLVLSNRKAIAGNQAQLGIGSVVTGSVQSLKPYGAFIDIGGINGLLHVSQISHDRVTDISTVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSGDGILGPFTSDLPEEGLDLSEVPPAEES 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0457 409 Pfam S1 RNA binding domain 258 327 IPR003029 GO:0003676
Ssu6g0457 409 Pfam S1 RNA binding domain 180 244 IPR003029 GO:0003676
Ssu6g0457 409 SMART S1_6 257 327 IPR022967 -
Ssu6g0457 409 SMART S1_6 180 246 IPR022967 -
Ssu6g0457 409 SMART S1_6 92 164 IPR022967 -
Ssu6g0457 409 ProSiteProfiles S1 domain profile. 94 164 IPR003029 GO:0003676
Ssu6g0457 409 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 34 409 - -
Ssu6g0457 409 PRINTS Ribosomal protein S1 signature 94 112 IPR035104 -
Ssu6g0457 409 PRINTS Ribosomal protein S1 signature 185 201 IPR035104 -
Ssu6g0457 409 PRINTS Ribosomal protein S1 signature 112 126 IPR035104 -
Ssu6g0457 409 PRINTS Ribosomal protein S1 signature 230 250 IPR035104 -
Ssu6g0457 409 ProSiteProfiles S1 domain profile. 182 246 IPR003029 GO:0003676
Ssu6g0457 409 CDD S1_RPS1_repeat_hs4 259 327 - -
Ssu6g0457 409 PANTHER 30S RIBOSOMAL PROTEIN S1 34 409 - -
Ssu6g0457 409 SUPERFAMILY Nucleic acid-binding proteins 258 337 IPR012340 -
Ssu6g0457 409 Gene3D - 254 331 IPR012340 -
Ssu6g0457 409 Gene3D - 175 253 IPR012340 -
Ssu6g0457 409 ProSiteProfiles S1 domain profile. 259 327 IPR003029 GO:0003676
Ssu6g0457 409 CDD S1_RPS1_repeat_ec2_hs2 193 246 - -
Ssu6g0457 409 SUPERFAMILY Nucleic acid-binding proteins 90 190 IPR012340 -
Ssu6g0457 409 MobiDBLite consensus disorder prediction 383 409 - -
Ssu6g0457 409 Coils Coil 344 364 - -
Ssu6g0457 409 SUPERFAMILY Nucleic acid-binding proteins 181 249 IPR012340 -
Ssu6g0457 409 Gene3D - 77 174 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0457 Ssu-Chr6 7167156 7170077 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0457 K02945 - gmx:100812847 682.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0457 6 7167156 7170077 Ssu6g0457 6 7167156 7170077 ECH
Ssu6g0457 6 7167156 7170077 Ssu1g1182 1 25921033 25925011 PCT