Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1182 ATGACGATGACGATGGCGATGACGGCGTCGCAGTTGCAGTGGGGGTGGAGACCGACGCTGAAGCAGCAACGACGTCGTATGGTTCCCGTGGTGTGTTCCATCGCTATAGAGAACACGCAGAACAAAGAGAGAGCGAGACTGAAAAAAATGTTCGAAGAAGCGTACGAGAGGTGCCGCACTGCTCCCACCGAAGGCGTTTCCTTCACTTACGAACAGTTCACCGACGCTCTCGACAAGTACGACTTCGACGCCGAAATTGGCACCAAGGTTAAGGGCACTGTTTTTGCCACGGATGCCAGTGGAGCTTATGTTGACATGACCGCGAAGTCCACGGCCTACTTGCCTCTGCAAGAGGCGTGCATCCACAAAGTTAAGAATGTGGAAGAAGCAGGTATAGTTCCTGGCTTGAGAGAGGAATTTGTGATCATTGGTGAGAATGAAGCTGATGATTCCTTGATCTTAAGTTTGAGGTCTATTCAATATGACCTTGCGTGGGAACGCTGCAGACAACTTCAGACTGAAGATGCTGTTGTCAAGGGTAAGGTTGTTAATGCAAACAAAGGAGGTCTGGTGGCTCAAGTGGAAGGACTTAAGGGGTTTGTTCCATTTTCACAGATATCAACGAAATTGACTGGAGAAGAGCTTCTTGAGAAGGAGATTCCTTTTAAGTTTGTGGAGGTGGATGAGGAACAGTCTAGACTTGTCCTCAGTCACCGCAAAGCGGTGGCTGAGAACCAAGGACAGCTAGGAATTGGATCAGTAGTCACTGGCTCTGTTCAAAGCATAAAGCCATATGGTGCCTTCATTGACATTGGTGGAATCAGTGGCCTCCTTCATGTCAGTCAGATCAGTCATGACCGTATAACTGATATTGCAACTGTTCTTCAACCTGGTGATATTCTGAAGGTGATGATCTTAAGTCATGACCGGGGGAGAGGACGAGTTAGTCTTTCCACAAAGAAGTTGGAACCCACACCTGGTGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATTGCTCAAGCAGAAGCTATGGCTCGTGCTGATATGCTTAGGTTCCAGCCAGagAGTGGATTAACTCTTAGCAGTGACGGAATCTTAGGACCACTTGCTTCAGACTTGCCTCCAGAGGGACTGGATCTCAGTGAGGTACCCGCAGCTGAAGATTCATGA 1209 0.4839 MTMTMAMTASQLQWGWRPTLKQQRRRMVPVVCSIAIENTQNKERARLKKMFEEAYERCRTAPTEGVSFTYEQFTDALDKYDFDAEIGTKVKGTVFATDASGAYVDMTAKSTAYLPLQEACIHKVKNVEEAGIVPGLREEFVIIGENEADDSLILSLRSIQYDLAWERCRQLQTEDAVVKGKVVNANKGGLVAQVEGLKGFVPFSQISTKLTGEELLEKEIPFKFVEVDEEQSRLVLSHRKAVAENQGQLGIGSVVTGSVQSIKPYGAFIDIGGISGLLHVSQISHDRITDIATVLQPGDILKVMILSHDRGRGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLASDLPPEGLDLSEVPAAEDS 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1182 402 PANTHER 30S RIBOSOMAL PROTEIN S1 19 402 - -
Ssu1g1182 402 ProSiteProfiles S1 domain profile. 175 239 IPR003029 GO:0003676
Ssu1g1182 402 Gene3D - 168 248 IPR012340 -
Ssu1g1182 402 ProSiteProfiles S1 domain profile. 252 320 IPR003029 GO:0003676
Ssu1g1182 402 SMART S1_6 250 320 IPR022967 -
Ssu1g1182 402 SMART S1_6 173 239 IPR022967 -
Ssu1g1182 402 SMART S1_6 85 157 IPR022967 -
Ssu1g1182 402 SUPERFAMILY Nucleic acid-binding proteins 174 242 IPR012340 -
Ssu1g1182 402 ProSiteProfiles S1 domain profile. 87 157 IPR003029 GO:0003676
Ssu1g1182 402 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 19 402 - -
Ssu1g1182 402 MobiDBLite consensus disorder prediction 376 402 - -
Ssu1g1182 402 CDD S1_RPS1_repeat_hs4 252 320 - -
Ssu1g1182 402 Coils Coil 337 357 - -
Ssu1g1182 402 Pfam S1 RNA binding domain 251 320 IPR003029 GO:0003676
Ssu1g1182 402 Pfam S1 RNA binding domain 173 239 IPR003029 GO:0003676
Ssu1g1182 402 SUPERFAMILY Nucleic acid-binding proteins 246 326 IPR012340 -
Ssu1g1182 402 CDD S1_RPS1_repeat_ec2_hs2 175 239 - -
Ssu1g1182 402 Gene3D - 249 328 IPR012340 -
Ssu1g1182 402 SUPERFAMILY Nucleic acid-binding proteins 79 182 IPR012340 -
Ssu1g1182 402 Gene3D - 70 167 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1182 Ssu-Chr1 25921033 25925011 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1182 K02945 - gmx:100806905 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1182 1 25921033 25925011 Ssu1g1182 1 25921033 25925011 ECH
Ssu6g0457 6 7167156 7170077 Ssu1g1182 1 25921033 25925011 PCT